Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ptychodera_20flava_20[genbank_20GCA_5F001465055.1_202015-12-01] 218,255 sequences; 1,228,694,352 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq67374 150 4e-31 >seq67374 Length=1687 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| ||||| || ||||| ||||| || ||||| ||| |||||| Sbjct 655 CAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTCGAACCATCAGAC 596 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||||||| || || |||||||| ||||| |||||||| ||||| || Sbjct 595 ACCATTGAGAACGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAACAG 536 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | || || || || ||| || Sbjct 535 CGTCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACACTGAGTGACTACAACATC 476 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || |||||||| || || || |||| Sbjct 475 CAGAAAGAATCTACTCTTCA-CTTG 452 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| ||||| || ||||| ||||| || ||||| ||| |||||| Sbjct 1111 CAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACTCTGGAGGTTGAACCATCAGAC 1052 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||||||| ||| || |||||||||||||| ||||| || ||||| || Sbjct 1051 ACCATTGAGAACGTCAAAGCAAAAATCCAGGACAAAGAAGGTATCCCACCAGACCAACAG 992 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | |||||||| | || || || || ||| || Sbjct 991 CGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACACTGAGTGACTACAACATC 932 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || |||||||| || || || |||| Sbjct 931 CAGAAAGAATCTACTCTTCA-CTTG 908 Score = 147 bits (162), Expect = 5e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| ||||| || || || |||||||| ||||| ||| |||||| Sbjct 1567 CAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAACCATCAGAC 1508 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| ||| || |||||||||||||| |||||||| || ||||| Sbjct 1507 ACCATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAAGGTATCCCTCCAGATCAGCAG 1448 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || ||||| || ||||| | || || || |||||| || Sbjct 1447 AGATTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGTACACTGAGTGACTATAACATC 1388 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || |||||||| || || || |||| || Sbjct 1387 CAGAAAGAATCTACTCTTCA-CTTGGTT 1361 Score = 136 bits (150), Expect = 9e-27 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || || || |||||||| ||||| ||| |||||| Sbjct 1339 CAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAACCATCAGAC 1280 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||| || |||||||||||||| ||||| || ||||| || Sbjct 1279 ACCATTGAGAATGTTAAGGCAAAAATCCAGGACAAAGAAGGTATCCCACCAGACCAACAG 1220 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | |||||||| | || || || || ||| || Sbjct 1219 CGTCTCATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACACTGAGTGACTACAACATC 1160 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 1159 CAGAAAGAGTCTACTCTTCA-CTTG 1136 Score = 118 bits (130), Expect = 3e-21 Identities = 115/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||||||| ||| || || ||||| ||||| |||||||| || |||| Sbjct 256 ACACCATTGAGAACGTCAAAGCAAAAATCCAAGACAAGGAAGGTATCCCTCCAGATCAGC 197 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| |||||||| |||||||| | || || || || ||| Sbjct 196 AGCGTCTCATCTTTGCCGGCAAACAGCTGGAAGATGGTCGTACACTGAGTGACTACAACA 137 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| |||||||| || || || |||| Sbjct 136 TCCAGAAAGAATCTACTCTTCA-CTTG 111 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| ||||| || || || |||||||| ||||| ||| |||||| Sbjct 427 CAGATCTTTGTCAAAACCCTCACTGGCAAGACTATCACCCTTGAGGTTGAACCATCAGAC 368 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030 ||||| ||||| || || ||| || |||||||||||||| ||||| Sbjct 367 ACCATTGAGAATGTTAAGGCAAAAATCCAGGACAAAGAAGGTATCCC 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200365095476470