Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4524 100 3e-16 seq4695 82.4 8e-11 >seq4524 Length=299079 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATA-CA 119072 || ||||| || ||||||||| | || ||||| | |||||||||||| | ||| || || Sbjct 20592 CCTACGTAGCCATTGGGATCTCTGCCATCTAAATTGTACTTATCGTTCAGGTAAATGGCA 20651 Query 119073 GACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACAT 119132 || || ||| ||||| | ||| |||||||||| ||||| |||||||||||||| Sbjct 20652 TCAGCC-AAGGCATCCTCCGGCGACTTGGTCCATTCCAGAATTTTCTTAGCCCAGTACAT 20710 Query 119133 ACGTAAATACCCGTGCATTTTACCCTC 119159 ||| | | ||||||||||| || || Sbjct 20711 ACGCAGGAAACCGTGCATTTTCCCTTC 20737 >seq4695 Length=2473718 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||||||||| || ||| |||||||| || ||||| | || | || || Sbjct 1457252 TCATCTCTGCTGATAAGCTCATTGCTGAAAGTTAAGCCAGGCATAATCCCCCTCTTTTTC 1457311 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 ||||| || || ||||| || || || || || || || || || |||| ||||||||| Sbjct 1457312 AACCAAAAAATTGCAGCGAAGGATCCAGAGAAAAAAATCCCTTCCACAGCTGCAAAAGCT 1457371 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCT 16405 | | || ||| ||| | | || || || |||||| || ||||||| || Sbjct 1457372 ACAACTCTTTCACTGTATGGATGCTCAGCATCACCAATCCACTTAATGGCCCATTCTGCC 1457431 Query 16406 TTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 || | | | | |||| | ||||| || || || |||| Sbjct 1457432 TTCTTTCTCACACAAGGAAGGGTTTCAATTGCATTGAACA 1457471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511383568104360