Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10]
4,823 sequences; 909,764,068 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq4695 163 3e-35
seq1700 125 8e-24
>seq4695
Length=2473718
Score = 163 bits (180), Expect = 3e-35
Identities = 156/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578
||||| ||||| ||||| || ||||| |||||||| || || | ||||| ||||||
Sbjct 1457838 AAATTCTCATTGACTATCCCATCACTTGCTGCAAAGAATGCAAGGACATGGGAAATAAAA 1457897
Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 24638
| |||||| |||||| | || || | ||| | || | |||||||||| |||||| |||
Sbjct 1457898 TGTTTTTCATCTGGTTTCAGCTTTTCCCACTGATCAAGGTCTTTAGATAAATCCACCTCT 1457957
Query 24639 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 24698
|| ||||||| ||||| |||||||| ||||| ||||| | |||||||||||| || |||
Sbjct 1457958 TCTGCTGTCCAGAATGAAGCCTCTGCTTTTTTGTACATCTGCCAGATGTCATGGTACTGA 1458017
Query 24699 ATTGGAAAAATAACAAATCT 24718
|| || || | ||||||||
Sbjct 1458018 ATGGGGAACAAGACAAATCT 1458037
Score = 91.5 bits (100), Expect = 2e-13
Identities = 140/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025
||| ||||| ||||| || || || | ||||||| ||||||||||| || || | ||
Sbjct 1456740 TCTGTCTGCAACAAATTCAATGTACTTCTTCATCAGCTCACAATTCATACCAATCAAGTT 1456799
Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 24085
|| || || || | ||||| |||||||||||||| | || || ||| ||| | ||
Sbjct 1456800 GACAGGCAGGGCATCTGTAAGGAATTCTTGTTCAATGGCAACAGCATCT-TTA-ATTATT 1456857
Query 24086 TCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 24143
|| | ||| | |||| | ||| || | ||||||||| ||||||| || || |||
Sbjct 1456858 TCATAAACTCTGTCTTTAGATGGTTTATTGATTAAATGTTTGAACATCAGGCAAGCAAAA 1456917
Query 24144 TCGCAGTGTAGACCCT 24159
|| || || || ||||
Sbjct 1456918 TCACAATGAAGTCCCT 1456933
>seq1700
Length=809593
Score = 125 bits (138), Expect = 8e-24
Identities = 150/201 (75%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010
|||||||| || |||||||||| ||| ||| |||||||||| |||||||||| | |
Sbjct 377256 TCAAACTCTTCACCCCAAACATCTGCCAGTCCTGGACATTCATTGGGACACATCAGAGTC 377197
Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069
|| ||||| | | || || || ||| ||||||||||| ||||| ||||| ||| ||
Sbjct 377196 CAGTCTCCATTCTGCTCTACACGCCGCATGAAGAGATCAGGGATCCAGAGAGC-ATAGAA 377138
Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129
|||||||| | ||| || || || || |||||||| || || | ||| || || | |
Sbjct 377137 AAGATCTCTTGCTCTCTGCTCTTCTTTCCCTGTATTTTTCTTCAAATCAAGAAAGTCAAA 377078
Query 54130 AATATCAGAATGCCACGGTTC 54150
||||| | |||||| || ||
Sbjct 377077 GATATCCGCATGCCATGGCTC 377057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593685806009040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |