Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4695 163 3e-35 seq1700 125 8e-24 >seq4695 Length=2473718 Score = 163 bits (180), Expect = 3e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 ||||| ||||| ||||| || ||||| |||||||| || || | ||||| |||||| Sbjct 1457838 AAATTCTCATTGACTATCCCATCACTTGCTGCAAAGAATGCAAGGACATGGGAAATAAAA 1457897 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 24638 | |||||| |||||| | || || | ||| | || | |||||||||| |||||| ||| Sbjct 1457898 TGTTTTTCATCTGGTTTCAGCTTTTCCCACTGATCAAGGTCTTTAGATAAATCCACCTCT 1457957 Query 24639 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 24698 || ||||||| ||||| |||||||| ||||| ||||| | |||||||||||| || ||| Sbjct 1457958 TCTGCTGTCCAGAATGAAGCCTCTGCTTTTTTGTACATCTGCCAGATGTCATGGTACTGA 1458017 Query 24699 ATTGGAAAAATAACAAATCT 24718 || || || | |||||||| Sbjct 1458018 ATGGGGAACAAGACAAATCT 1458037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025 ||| ||||| ||||| || || || | ||||||| ||||||||||| || || | || Sbjct 1456740 TCTGTCTGCAACAAATTCAATGTACTTCTTCATCAGCTCACAATTCATACCAATCAAGTT 1456799 Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 24085 || || || || | ||||| |||||||||||||| | || || ||| ||| | || Sbjct 1456800 GACAGGCAGGGCATCTGTAAGGAATTCTTGTTCAATGGCAACAGCATCT-TTA-ATTATT 1456857 Query 24086 TCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 24143 || | ||| | |||| | ||| || | ||||||||| ||||||| || || ||| Sbjct 1456858 TCATAAACTCTGTCTTTAGATGGTTTATTGATTAAATGTTTGAACATCAGGCAAGCAAAA 1456917 Query 24144 TCGCAGTGTAGACCCT 24159 || || || || |||| Sbjct 1456918 TCACAATGAAGTCCCT 1456933 >seq1700 Length=809593 Score = 125 bits (138), Expect = 8e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 |||||||| || |||||||||| ||| ||| |||||||||| |||||||||| | | Sbjct 377256 TCAAACTCTTCACCCCAAACATCTGCCAGTCCTGGACATTCATTGGGACACATCAGAGTC 377197 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069 || ||||| | | || || || ||| ||||||||||| ||||| ||||| ||| || Sbjct 377196 CAGTCTCCATTCTGCTCTACACGCCGCATGAAGAGATCAGGGATCCAGAGAGC-ATAGAA 377138 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 |||||||| | ||| || || || || |||||||| || || | ||| || || | | Sbjct 377137 AAGATCTCTTGCTCTCTGCTCTTCTTTCCCTGTATTTTTCTTCAAATCAAGAAAGTCAAA 377078 Query 54130 AATATCAGAATGCCACGGTTC 54150 ||||| | |||||| || || Sbjct 377077 GATATCCGCATGCCATGGCTC 377057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593685806009040