Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1115 140 5e-28 seq4782 120 5e-22 >seq1115 Length=79802 Score = 140 bits (154), Expect = 5e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || ||||| || || ||||| || || | || ||||| || | Sbjct 1612 ATGCAGATCTTTGTGAAAACACTTACTGGTAAAACAATCACCCTTGAAGTTGAACCATCT 1671 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || |||||||| ||||||||||| ||||| ||||| Sbjct 1672 GACACCATTGAAAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCCGATCAG 1731 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || |||||| | || ||| |||| ||| | ||| || || Sbjct 1732 CAGCGTCTTATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACACTGTCAGACTACAAC 1791 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || |||||||| ||| ||||||| || |||||| | || ||||| Sbjct 1792 ATCCAGAAAGAATCTACTCTGCATTTAGTATTACGTCTTCGTGGTGG 1838 >seq4782 Length=111569 Score = 120 bits (132), Expect = 5e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| |||| | | | Sbjct 12656 ATGCAGATTTTTGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTTGAGCCCAGT 12715 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| ||||| || |||||||||||||| || ||||| ||| Sbjct 12716 GATACAATTGAAAATGTCAAAGCTAAAATCCAGGATAAAGAAGGTATTCCTCCTGACCAA 12775 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | |||||||| || || || | ||||| | || || | ||| ||||| Sbjct 12776 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGACGGGCGCACTCTCTCAGACTATAAC 12835 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||||||||| || ||| | || || || Sbjct 12836 ATTCAAAAAGAGTCTACTCTCCACTTAGT 12864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755410455446400