Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4782 113 4e-20 seq1115 111 1e-19 >seq4782 Length=111569 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||| || ||||||| |||||||||||||||||||| || || | ||||||| Sbjct 12871 TCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCC 12812 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||||| ||||| || ||||| | || | | ||| || || ||||| || || || || Sbjct 12811 GTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCTTT 12752 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || ||||| ||| || | ||| | || || || ||| ||||| | ||| | Sbjct 12751 ATCCTGGATTTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAACCTCAAGGGTAAT 12692 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| ||||| || || ||||||||||||||| Sbjct 12691 GGTCTTGCCCGTCAGGGTCTTCACAAAAATCTGCATG 12655 >seq1115 Length=79802 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| ||||| || |||||||| || || || || ||| || || ||||| ||| Sbjct 1808 GTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTACGACCATCTTCAAGTTGTTTGCCA 1749 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| ||||||||||||||||| || || || || |||||| ||| || ||| Sbjct 1748 GCAAAGATAAGACGCTGCTGATCGGGTGGGATACCTTCTTTGTCTTGAATCTTAGCTTTG 1689 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | |||||| | || | || || || | ||| | ||||| || || || || Sbjct 1688 ACATTTTCAATGGTGTCAGATGGT-TCAACTTCAAGGGTGATTGTTTTACCAGTAAGTGT 1630 Query 118721 TTTTACAAAAATCTGCAT 118738 ||| ||||| |||||||| Sbjct 1629 TTTCACAAAGATCTGCAT 1612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433804899313516