Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4695 102 8e-17 >seq4695 Length=2473718 Score = 102 bits (112), Expect = 8e-17 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 15940 CATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAAT 15999 |||||| |||||||| | |||| |||| ||||||||||| ||||| || ||||| || || Sbjct 1456435 CATTTTCTGATATTCCCCAACTTTCTTCTCAAAGAAATTCGTTTTCCCCTCTAAAGATAT 1456494 Query 16000 ATTTTCCATAAAATCAAAAGGATTTTTTGAA 16030 | ||||||||||||||| ||||||| |||| Sbjct 1456495 GTGTTCCATAAAATCAAATGGATTTTCTGAA 1456525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/224 (70%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 16039 TTTATCGCATCCCAATTCCAACAATAA-TCTATCCGCCACAAATTCTATATACTGTTTCA 16097 ||| || ||||||| || ||| | || ||| || || |||||||| || |||| |||| Sbjct 1456713 TTTTTCACATCCCAGCTC-AACTAGAAGTCTGTCTGCAACAAATTCAATGTACTTCTTCA 1456771 Query 16098 TTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAttttttt 16157 | | ||||| ||||| || || || || ||||| | || ||||| | || | || || Sbjct 1456772 TCAGCTCACAATTCATACCAATCAAGTTGACAGGCAGGGCATCTGTAAGGAATTCTTGTT 1456831 Query 16158 CTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAAT- 16216 | || ||| || || | ||||| || ||| | | |||| || |||||| | Sbjct 1456832 CAATGGCAACAGCATCTTTAATTATTTCATAAACT-CTGTCTTTA---GATGGTTTATTG 1456887 Query 16217 ---AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCC 16257 || ||||| ||||| | ||||||||||||||||| | ||| Sbjct 1456888 ATTAAATGTTTGAACATCAGGCAAGCAAAATCACAATGAAGTCC 1456931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462484116307800