Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4695 96.9 3e-15 >seq4695 Length=2473718 Score = 96.9 bits (106), Expect = 3e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 || ||||||||||| |||||||| | |||| | || |||||||| || ||||| || || Sbjct 1456427 ATGACGCCCATTTTCTGATATTCCCCAACTTTCTTCTCAAAGAAATTCGTTTTCCCCTCT 1456486 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTT 13993 | ||||| | |||||||||||||||||||||| Sbjct 1456487 AAAGATATGTGTTCCATAAAATCAAATGGATTT 1456519 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/126 (79%), Gaps = 6/126 (5%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 14283 |||||||||| || ||||| || || ||||| ||||| || ||||| ||||| | | | Sbjct 1457250 CCTCATCTCTGCTGATAAGCTCATTGCTGAAA--GTTAAGCCAGGCAT-AATCCCCCTCT 1457306 Query 14284 tttt-AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAA 14342 |||| |||||||| ||||||||||| ||||| || || || || || || || || |||| Sbjct 1457307 TTTTCAACCAAAAAATTGCAGCGAAGGATCCAGAGAAAAAAATCCCTTCCACAGCTGCAA 1457366 Query 14343 ACGCTA 14348 | |||| Sbjct 1457367 AAGCTA 1457372 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| |||||||||||||| |||||||| ||| ||| | |||||||| || || ||| Sbjct 1457599 ATGTAGGTATCAATAAGTAAACTATACATCTCACTGTGCACATTTTCCATGGCAATTTGA 1457658 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT 14572 |||||||||||||| | ||| |||| | || |||||| Sbjct 1457659 AAACCATAAAAACAACGAGCCTCTGTCACCTGAACCTCT 1457697 Score = 82.4 bits (90), Expect = 7e-11 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065 ||||| ||||| || || || | ||| | ||| || |||| || ||||| || | | Sbjct 1456711 ACTTTTTCACATCCCAGCTCAACTAGAAGTCTGTCTGCAACAAATTCAATGTACTTCTTC 1456770 Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125 || | |||||||||||||| || | || ||||| | || || | ||||||| | Sbjct 1456771 ATCAGCTCACAATTCATACCAATCAAGTTGACAGGCAGGGCATCTGTAAGGAATTCTTGT 1456830 Query 14126 TCTATAGACACAGCCTCGTTTATAATAATCGT-AATAATTTCATTAGAAGGAGGATATTT 14184 || || | ||||| || || || || || | || | || ||||| || || | Sbjct 1456831 TCAATGGCAACAGCATCTTTAATTAT-TTCATAAACTCTGTCTTTAGATGGTTTATTGAT 1456889 Query 14185 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 14228 || |||||| || || | || ||||||||||||||||| |||| Sbjct 1456890 TAAATGTTTGAACATCAGGCAAGCAAAATCACAATGAAGTCCCT 1456933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482316520589640