Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1115 84.2 2e-11 >seq1115 Length=79802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| ||||| | || || ||||| || ||| | || || ||| | Sbjct 1612 ATGCAGATCTTTGTGAAAACACTTACTGGTAAAACAATCACCCTTGAAGTTGAACCATCT 1671 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| ||| || | || ||| | |||||||| | || || ||| Sbjct 1672 GACACCATTGAAAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCCGATCAG 1731 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 || ||| | || | ||| ||||||||||| |||||| || ||| | | || |||| Sbjct 1732 CAGCGTCTTATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACACTGTCA--GACTACA 1789 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 ||| |||||||| | || || |||||||| ||||| Sbjct 1790 ACATCCAGAAAGAATCTACTCTGCATTTAGTATTACG 1826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418279411960160