Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1115 104 2e-17 seq1700 102 7e-17 seq4782 96.9 3e-15 seq4695 95.1 1e-14 >seq1115 Length=79802 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || || ||||| |||||| | || |||||||| || Sbjct 1612 ATGCAGATCTTTGTGAAAACACTTACTGGTAAAACAATCACCCTTGAAGTTGAACCATCT 1671 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | || ||||| ||||| | || ||||| ||| Sbjct 1672 GACACCATTGAAAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCCGATCAG 1731 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||||||||| | ||||| | || || || || ||| Sbjct 1732 CAGCGTCTTATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACACTGTCAGACTACAAC 1791 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 || || |||||||| ||||| ||| | ||| Sbjct 1792 ATCCAGAAAGAATCTACTCTGCATTTAGTA 1821 >seq1700 Length=809593 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23267 TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTC 23326 ||||| || |||| || || ||||| || || ||| | |||||||| ||| || Sbjct 377256 TCAAACTCTTCACCCCAAACATCTGCCAGTCCTGGACATTCATTGGGACACATCAGAGTC 377197 Query 23327 CACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAAC 23386 || | | | || || || | ||| || ||||| || ||||| ||||| ||||| Sbjct 377196 CAGTCTCCATTCTGCTCTACACGCCGCATGAAGAGATCAGGGATCCAGAGAGCATAGAAA 377137 Query 23387 AGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAAC 23446 || || | || | | ||| ||||| || || || || |||||||| | |||||| || Sbjct 377136 AGATCTCTTGCTCTCTGCTCTTCTTTCCCTGTATTTTTCTTCAAATCAAGAAAGTCAAAG 377077 Query 23447 ACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 | ||||||||||| ||||| || || | ||||| || || ||||||| Sbjct 377076 ATATCCGCATGCCATGGCTCTAGATAGATTGCAAAGGCACCAGGTCTCT 377028 >seq4782 Length=111569 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| ||||| ||||| || || ||| | || ||||| || Sbjct 12655 CATGCAGATTTTTGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTTGAGCCCAG 12714 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| |||||| | ||| ||| || ||||| | || || ||||| Sbjct 12715 TGATACAATTGAAAATGTCAAAGCTAAAATCCAGGATAAAGAAGGTATTCCTCCTGACCA 12774 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || || ||||| || ||| | || ||| ||| | || ||||| Sbjct 12775 ACAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGACGGGCGCACTCTCTCAGACTATAA 12834 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGAA 31424 |||||||||||| || ||||| || | ||||| ||||| || || ||| ||| Sbjct 12835 CATTCAAAAAGAGTCTACTCTCCACTTAGTACTGAGACTCAGAGGTGGTGGAA 12887 >seq4695 Length=2473718 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || ||||| | || |||| || || | ||||||||| |||| || ||| | || | Sbjct 1458067 GAAGAACCCTTGCTGAAAGAAAACCCTGGAAGATTTGTCTTGTTCCCCATTCAGTACCAT 1458008 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||||| ||| | ||||||||||| ||||| || || || ||||| | ||||| || || Sbjct 1458007 GACATCTGGCAGATGTACAAAAAAGCAGAGGCTTCATTCTGGACAGCAGAAGAGGTGGAT 1457948 Query 57627 CTGTCTAAGGATCT-GAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 | ||||| || || || | | ||||| || ||| | ||| | | |||||||| Sbjct 1457947 TTATCTAAAGACCTTGATC-AGTGGGAAAAGCTGAAACCAGATGAAAAACATTTTATTTC 1457889 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || || | || || || || ||| ||||| || || || ||||||||||| Sbjct 1457888 CCATGTCCTTGCATTCTTTGCAGCAAGTGATGGGATAGTCAATGAGAATTTGGT 1457835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445739525858160