Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4695 114 1e-20 seq1700 114 1e-20 >seq4695 Length=2473718 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 12014 AAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAG 12073 ||||||||||| || || |||||||| | |||||| ||||| || | ||| ||||| Sbjct 1457838 AAATTCTCATTGACTATCCCATCACTTGCTGCAAAGAATGCAAGGACATGGGAAATAAAA 1457897 Query 12074 TATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCT 12133 | |||||| ||| | | || ||||| | ||| | ||||| |||||||| || ||| Sbjct 1457898 TGTTTTTCATCTGGTTTCAGCTTTTCCCACTGATCAAGGTCTTTAGATAAATCCACCTCT 1457957 Query 12134 TCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTA 12193 || | ||||| || ||| ||| || ||| ||||| | |||||| ||||| |||| | Sbjct 1457958 TCTGCTGTCCAGAATGAAGCCTCTGCTTTTTTGTACATCTGCCAGATGTCATGGTACTGA 1458017 Query 12194 ATAGGGAA 12201 || ||||| Sbjct 1458018 ATGGGGAA 1458025 Score = 96.9 bits (106), Expect = 3e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || || ||||| || ||||| || ||||| ||||| | | ||||| Sbjct 1457252 TCATCTCTGCTGATAAGCTCATTGCTGAAAGTTAAGCCAGGCAT-AATCCCCCTCTTTTT 1457310 Query 11714 -ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGC 11772 | |||||| || ||||| || || ||||| || || || || |||||||||||||| || Sbjct 1457311 CAACCAAAAAATTGCAGCGAAGGATCCAGAGAAAAAAATCCCTTCCACAGCTGCAAAAGC 1457370 Query 11773 TACTACTCTTTC 11784 ||| |||||||| Sbjct 1457371 TACAACTCTTTC 1457382 >seq1700 Length=809593 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 37115 CTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATA 37174 || ||| ||| || | || |||| ||||| || || || | ||||||||| || |||| Sbjct 382823 CTTTCAGTAGATGATGGTTGACAATTTGAAATTCCCCTGAAAGTACTCTTCTAGTGTATA 382764 Query 37175 TATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAG 37234 ||||||| || |||| ||||||||| ||||| || | | ||||||| ||| ||||| | Sbjct 382763 TATTGCTTGTGTATGCTTCAATGGATTCATTGTTGCCGAGAATTTGAGCTGTGGATGCTG 382704 Query 37235 TAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 | ||||||||||| || || || || ||||| Sbjct 382703 TTGGCATTGGTGCCATGAGGAGACTGTTTCT 382673 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 37332 CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGG 37391 ||||||||||| ||| ||||| |||||| | | ||| | | | || |||||||||| Sbjct 380621 CCACATATCATGTTGAAGAATTCCTTTAGACACAGGACAGCCTTCGTAAGTCTCATAAGT 380562 Query 37392 TCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAA 37451 || || ||| || | ||| || || | || ||||| ||| | || || || || || Sbjct 380561 CCCATACTTTTCTGCCAATTCACAGCTGGCATCAAGTGCAGCAAAGTACATGGTCTCAAA 380502 Query 37452 AATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAA 37511 ||| | | |||| || ||| ||||| ||| ||||||| ||| | || || ||||| Sbjct 380501 AATCTCTTTATTCAACTGTTTGGCTTCAGGGCTGTCGAATGGATACCTCATCAAAATAAA 380442 Query 37512 CACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553 |||| |||||||||||||| || | || || || | ||| Sbjct 380441 TGCATCTGCCAAACCCTGAACTCCAAGCCCAATAGGGCGATG 380400 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 37951 CCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCT 38010 ||||| ||||| | |||||||||||| |||||||| |||| ||| ||| ||| Sbjct 377244 CCCCAAACATCTGCCAGTCCTGGACATTCATTGGGACACATCAGAGTCCAGTCTCCATTC 377185 Query 38011 TTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTT 38070 | ||||| || ||| || | |||||| | ||| | ||| || | |||| | | | Sbjct 377184 TGCTCTACACGCCGCATGAAGAGATCAGGGATCCAGAGAGCATAGAAAAGATCTCTTGCT 377125 Query 38071 CTATATTCTTCGTTCCCTACATTCTTTCTT-AAGCTTAGAAAATCGAATATATCAGCGTG 38129 || | ||||| |||||| ||| |||||| || ||||| || || ||||| || || Sbjct 377124 CTCTGCTCTTCTTTCCCTGTATT-TTTCTTCAAATCAAGAAAGTCAAAGATATCCGCATG 377066 Query 38130 CCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 |||||| |||| ||| || | | || || ||||| Sbjct 377065 CCATGGCTCTAGATAGATTGCAAAGGCACCAGGTCT 377030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468496553811120