Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4695 158 2e-33 seq1700 113 6e-20 >seq4695 Length=2473718 Score = 158 bits (174), Expect = 2e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 ||||| ||||| ||||| || ||||| |||||||| || || | ||||| |||||| Sbjct 1457838 AAATTCTCATTGACTATCCCATCACTTGCTGCAAAGAATGCAAGGACATGGGAAATAAAA 1457897 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 36661 | |||||| | |||| | || || | ||| | || | |||||||||| |||||| ||| Sbjct 1457898 TGTTTTTCATCTGGTTTCAGCTTTTCCCACTGATCAAGGTCTTTAGATAAATCCACCTCT 1457957 Query 36662 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 36721 || ||||||| ||||| |||||||| ||||| ||||| | |||||||||||| || ||| Sbjct 1457958 TCTGCTGTCCAGAATGAAGCCTCTGCTTTTTTGTACATCTGCCAGATGTCATGGTACTGA 1458017 Query 36722 ATTGGAAAAATAACAAATCT 36741 || || || | |||||||| Sbjct 1458018 ATGGGGAACAAGACAAATCT 1458037 Score = 100 bits (110), Expect = 4e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 35962 TTTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCAT 36021 ||||| | |||||| ||| | | ||| ||||| |||||||| || || | ||||| Sbjct 1456713 TTTTTCACATCCCAGCTCAACTAGAAGTCTGTCTGCAACAAATTCAATGTACTTCTTCAT 1456772 Query 36022 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTC 36081 || ||||||||||| || || | || || || || || | ||||| ||||||||||| Sbjct 1456773 CAGCTCACAATTCATACCAATCAAGTTGACAGGCAGGGCATCTGTAAGGAATTCTTGTTC 1456832 Query 36082 AATAGAGACCGCGTCTGTTA-TAATAGATATTACTGTTTCTTCACTCGGTGGATACAATA 36140 ||| | || || ||| | | || | ||| ||| | |||| | ||| || | || Sbjct 1456833 AATGGCAACAGCATCTTTAATTATTTCATA-AACTCTGTCTTTAGATGGTTTATTGATTA 1456891 Query 36141 AATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 36182 ||||||| ||||||| || || ||||| || || || |||| Sbjct 1456892 AATGTTTGAACATCAGGCAAGCAAAATCACAATGAAGTCCCT 1456933 >seq1700 Length=809593 Score = 113 bits (124), Expect = 6e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || ||||| || |||||||||| ||| ||| |||||||||| |||||||||| | | Sbjct 377256 TCAAACTCTTCACCCCAAACATCTGCCAGTCCTGGACATTCATTGGGACACATCAGAGTC 377197 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 66100 || ||||| | | || || || ||| ||||||||||| ||||| ||||| ||| || Sbjct 377196 CAGTCTCCATTCTGCTCTACACGCCGCATGAAGAGATCAGGGATCCAGAGAGC-ATAGAA 377138 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | |||||| | ||| || || || || |||||||| || || | ||| || || | | Sbjct 377137 AAGATCTCTTGCTCTCTGCTCTTCTTTCCCTGTATTTTTCTTCAAATCAAGAAAGTCAAA 377078 Query 66161 AATATCATAATGCCACGGTTC 66181 ||||| |||||| || || Sbjct 377077 GATATCCGCATGCCATGGCTC 377057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658133120407320