Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4782 125 7e-24 seq1115 105 7e-18 >seq4782 Length=111569 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||| | ||||||||||||||||||||||| || | |||| | ||| || Sbjct 12864 ACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCCGTCCTCA 12805 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| ||||||||| | |||| | || || || ||||| || |||||||| || | Sbjct 12804 AGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGG 12745 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| ||| | | ||| | ||| || ||||||| ||||||| ||| | |||||| Sbjct 12744 ATTTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAACCTCAAGGGTAATGGTCTTG 12685 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| || || || || || ||||| Sbjct 12684 CCCGTCAGGGTCTTCACAAAAATCTGCAT 12656 >seq1115 Length=79802 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| || ||||| || | ||||| ||||| || ||||| || || Sbjct 1839 GCCACCACGAAGACGTAATACTAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTGA 1780 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| | ||||| || ||||| |||||| |||| ||||| ||||||||||| || Sbjct 1779 CAGTGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGG 1720 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| | || | ||| | | ||| | ||||| | || || | Sbjct 1719 GATACCTTCTTTGTC-TTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCAA 1661 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | |||| ||| | || || || || | ||||| || || || |||||| Sbjct 1660 CTTCAAGGGTGATTGTTTTACCAGTAAGTGTTTTCACAAAGATCTGCATA 1611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496034093541600