Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10]
4,823 sequences; 909,764,068 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq4695 154 2e-32
seq1700 131 2e-25
>seq4695
Length=2473718
Score = 154 bits (170), Expect = 2e-32
Identities = 154/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 50344 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 50403
||||| ||||| ||||| || ||||| |||||||| || || | ||||| ||||||
Sbjct 1457838 AAATTCTCATTGACTATCCCATCACTTGCTGCAAAGAATGCAAGGACATGGGAAATAAAA 1457897
Query 50404 TGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 50463
|||||||| | ||| | || || | ||| | || | |||||||||| ||| || |||
Sbjct 1457898 TGTTTTTCATCTGGTTTCAGCTTTTCCCACTGATCAAGGTCTTTAGATAAATCCACCTCT 1457957
Query 50464 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 50523
|| ||||||| ||||| |||||||| ||||| ||||| | |||||||||||| || ||
Sbjct 1457958 TCTGCTGTCCAGAATGAAGCCTCTGCTTTTTTGTACATCTGCCAGATGTCATGGTACTGA 1458017
Query 50524 ATTGGGAAAATAACAAATCT 50543
|| ||||| | ||||||||
Sbjct 1458018 ATGGGGAACAAGACAAATCT 1458037
Score = 102 bits (112), Expect = 1e-16
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 49764 TTTTTTAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCAT 49823
||||| | |||||| ||| | | ||| || || |||||||| || || | |||||
Sbjct 1456713 TTTTTCACATCCCAGCTCAACTAGAAGTCTGTCTGCAACAAATTCAATGTACTTCTTCAT 1456772
Query 49824 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTC 49883
|| ||||||||||| || || | || || || || || | ||||| |||||||||||
Sbjct 1456773 CAGCTCACAATTCATACCAATCAAGTTGACAGGCAGGGCATCTGTAAGGAATTCTTGTTC 1456832
Query 49884 AATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAA 49943
||||| || |||||| | || || ||| | |||| | ||| || | |||
Sbjct 1456833 AATGGCAACAGCATCTTTAATTATTTCATAAACTCTGTCTTTAGATGGTTTATTGATTAA 1456892
Query 49944 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984
|||||| ||||||| || || ||||| || || || ||||
Sbjct 1456893 ATGTTTGAACATCAGGCAAGCAAAATCACAATGAAGTCCCT 1456933
>seq1700
Length=809593
Score = 131 bits (144), Expect = 2e-25
Identities = 151/201 (75%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920
|| ||||| || ||||||||||| | | ||| |||||||| | |||||||||| | |
Sbjct 377256 TCAAACTCTTCACCCCAAACATCTGCCAGTCCTGGACATTCATTGGGACACATCAGAGTC 377197
Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 79979
|| ||||||| | || ||| || ||| ||||||||||| ||||| ||||| ||| ||
Sbjct 377196 CAGTCTCCATTCTGCTCTACACGCCGCATGAAGAGATCAGGGATCCAGAGAGC-ATAGAA 377138
Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039
|||||||| | ||| ||||| || || |||||||| || || | ||| || || | |
Sbjct 377137 AAGATCTCTTGCTCTCTGCTCTTCTTTCCCTGTATTTTTCTTCAAATCAAGAAAGTCAAA 377078
Query 80040 AATATCAGAATGCCACGGTTC 80060
||||| | |||||| || ||
Sbjct 377077 GATATCCGCATGCCATGGCTC 377057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718225497369720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |