Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4695 96.9 3e-15 >seq4695 Length=2473718 Score = 96.9 bits (106), Expect = 3e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 || ||||||||||| |||||||| | |||| | || |||||||| || ||||| || || Sbjct 1456427 ATGACGCCCATTTTCTGATATTCCCCAACTTTCTTCTCAAAGAAATTCGTTTTCCCCTCT 1456486 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTT 13661 | ||||| | |||||||||||||||||||||| Sbjct 1456487 AAAGATATGTGTTCCATAAAATCAAATGGATTT 1456519 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 ||||| ||||| || || || | ||| | ||| || |||| ||| ||||| || | | Sbjct 1456711 ACTTTTTCACATCCCAGCTCAACTAGAAGTCTGTCTGCAACAAATTCAATGTACTTCTTC 1456770 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 || | |||||||||||||| || | || ||||| | || || | ||||||| | Sbjct 1456771 ATCAGCTCACAATTCATACCAATCAAGTTGACAGGCAGGGCATCTGTAAGGAATTCTTGT 1456830 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAA----TCTCATTAGAAGGAGGATA 13849 || || | ||||| |||| |||| ||| | |||| | || ||||| || || Sbjct 1456831 TCAATGGCAACAGCATCTT---TAATTATT-TCATAAACTCTGTCTTTAGATGGTTTATT 1456886 Query 13850 TTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 ||| |||||| || || | || ||||||||||||||||| |||| Sbjct 1456887 GATTAAATGTTTGAACATCAGGCAAGCAAAATCACAATGAAGTCCCT 1456933 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| |||||||||||||| |||||||| ||| ||| | |||||||| || || ||| Sbjct 1457599 ATGTAGGTATCAATAAGTAAACTATACATCTCACTGTGCACATTTTCCATGGCAATTTGA 1457658 Query 14202 AAACCATAAAAGCATCTAGCTTC 14224 ||||||||||| || | ||| || Sbjct 1457659 AAACCATAAAAACAACGAGCCTC 1457681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479699078398200