Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq4695 93.3 4e-14 >seq4695 Length=2473718 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/126 (79%), Gaps = 6/126 (5%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 |||||||||| || ||||| || || ||||| ||||| || ||||| ||||| | | | Sbjct 1457250 CCTCATCTCTGCTGATAAGCTCATTGCTGAAA--GTTAAGCCAGGCAT-AATCCCCCTCT 1457306 Query 13740 tttt-AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAA 13798 |||| |||||||| ||||||||||| ||||| || || || || || || || || |||| Sbjct 1457307 TTTTCAACCAAAAAATTGCAGCGAAGGATCCAGAGAAAAAAATCCCTTCCACAGCTGCAA 1457366 Query 13799 ACGCTA 13804 | |||| Sbjct 1457367 AAGCTA 1457372 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 || ||||||||||| |||||||| | |||| | || ||||| || || ||||| || || Sbjct 1456427 ATGACGCCCATTTTCTGATATTCCCCAACTTTCTTCTCAAAGAAATTCGTTTTCCCCTCT 1456486 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTT 13449 | ||||| | |||||||||||| ||||||||| Sbjct 1456487 AAAGATATGTGTTCCATAAAATCAAATGGATTT 1456519 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/227 (69%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521 ||||| ||||| || || || | || | ||| || |||| ||| ||||| || | | Sbjct 1456711 ACTTTTTCACATCCCAGCTCAACTAGAAGTCTGTCTGCAACAAATTCAATGTACTTCTTC 1456770 Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581 || | |||||||||||||| || | || ||||| | || || | ||||||| | Sbjct 1456771 ATCAGCTCACAATTCATACCAATCAAGTTGACAGGCAGGGCATCTGTAAGGAATTCTTGT 1456830 Query 13582 TCTATAGACACAGCCTCGTTTATAATAATCTTAATAA----TGTCATTAGAAGGAGGATA 13637 || || | ||||| || || || || || |||| |||| ||||| || || Sbjct 1456831 TCAATGGCAACAGCATCTTTAATTAT----TTCATAAACTCTGTCTTTAGATGGTTTATT 1456886 Query 13638 TTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684 ||| |||||| || || | || ||||||||||||||||| |||| Sbjct 1456887 GATTAAATGTTTGAACATCAGGCAAGCAAAATCACAATGAAGTCCCT 1456933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| |||||||||||||| |||||||| ||| ||| | ||||| || || || ||| Sbjct 1457599 ATGTAGGTATCAATAAGTAAACTATACATCTCACTGTGCACATTTTCCATGGCAATTTGA 1457658 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 |||||||||||||| | ||| |||| | || ||||| Sbjct 1457659 AAACCATAAAAACAACGAGCCTCTGTCACCTGAACCTC 1457696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478559947077720