Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1700 125 1e-23 seq4695 91.5 2e-13 >seq1700 Length=809593 Score = 125 bits (138), Expect = 1e-23 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || ||||| || |||||| ||| | | ||| ||||||||||| |||||||||| | | Sbjct 377256 TCAAACTCTTCACCCCAAACATCTGCCAGTCCTGGACATTCATTGGGACACATCAGAGTC 377197 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 72062 || ||||||| | | ||| || ||| ||||||||||| ||||| ||||| ||| || Sbjct 377196 CAGTCTCCATTCTGCTCTACACGCCGCATGAAGAGATCAGGGATCCAGAGAGC-ATAGAA 377138 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 |||||||| | ||| ||||| || || |||||||| || || | ||| || || | | Sbjct 377137 AAGATCTCTTGCTCTCTGCTCTTCTTTCCCTGTATTTTTCTTCAAATCAAGAAAGTCAAA 377078 Query 72123 AATATCAGAATGCCACGGTTC 72143 ||||| | |||||| || || Sbjct 377077 GATATCCGCATGCCATGGCTC 377057 >seq4695 Length=2473718 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 41869 ttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCAT 41928 ||||| | |||||| ||| | | ||| ||||| | ||||| || || | ||||| Sbjct 1456713 TTTTTCACATCCCAGCTCAACTAGAAGTCTGTCTGCAACAAATTCAATGTACTTCTTCAT 1456772 Query 41929 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTC 41988 || ||||||||||| || || | || || || || || | ||||| ||||||||||| Sbjct 1456773 CAGCTCACAATTCATACCAATCAAGTTGACAGGCAGGGCATCTGTAAGGAATTCTTGTTC 1456832 Query 41989 AATAGAGACCGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAAT 42046 ||| | || || ||| ||| | || || | ||| | |||| | ||| || | | Sbjct 1456833 AATGGCAACAGCATCT-TTA-ATTATTTCATAAACTCTGTCTTTAGATGGTTTATTGATT 1456890 Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 42089 |||||||| ||||||| || || ||||| || || || |||| Sbjct 1456891 AAATGTTTGAACATCAGGCAAGCAAAATCACAATGAAGTCCCT 1456933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671098738695480