Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1115 134 1e-26 >seq1115 Length=79802 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| || |||||||| | ||||||||||| || |||||||| || Sbjct 1839 GCCACCACGAAGACGTAATACTAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTGA 1780 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||| | ||||| |||||||| |||||| |||| ||||| ||||||||||| || Sbjct 1779 CAGTGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGG 1720 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||| || ||| | | ||| | ||||| | ||||| || Sbjct 1719 GATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCAAC 1660 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| || | || || || || | |||||| || || || |||||| Sbjct 1659 TTCAAGGGTGATTGTTTTACCAGTAAGTGTTTTCACAAAGATCTGCATA 1611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506983833369360