Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1115 109 4e-19 >seq1115 Length=79802 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 15134 CTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCG 15193 |||||||| | | | ||| |||||||| || || || ||||| || |||||||| || Sbjct 1841 CTGCCACCACGAAGACGTAATACTAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCT 1782 Query 15194 CTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTT 15253 || | | | ||||| | |||||||||||| | || | ||| || || ||| | Sbjct 1781 GACAGTGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGT 1722 Query 15254 GGAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTC 15312 || || ||||||||||| ||| || ||| || ||| |||| ||||| || ||| Sbjct 1721 GGGATACCTTCTTTGTCTTGAATCTTAGCT-TTGACATTTTCAATGGTGTCAGATGGTTC 1663 Query 15313 TACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || | ||| || |||||||| || || ||||| ||||| || |||||| Sbjct 1662 AACTTCAAGGGTGATTGTTTTACCAGTAAGTGTTTTCACAAAGATCTGCATA 1611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362157910993443