Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq4782 93.3 3e-14 >seq4782 Length=111569 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 43891 TCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC 43950 || ||| ||||| | ||| | || || || || || |||||||||||| ||||| || Sbjct 12886 TCCACCACCTCTGAGTCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTC 12827 Query 43951 GTTTA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCT 44009 | | || ||| | || || | || || || ||||| ||||||| || ||||| Sbjct 12826 TGAGAGAGTG-CGCCCGTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAG 12768 Query 44010 GAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCT 44069 |||| | |||||||||||| ||||| |||||| | ||| ||||| |||| Sbjct 12767 GAGGAATACCTTCTTTATCCTGGATTTTAGCTTTGACATTTTCAATTGTATCACTGGGCT 12708 Query 44070 CCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || || | ||||| || || || || | ||||||||||| || |||||| Sbjct 12707 CAACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAAATCTGCATG 12655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354756746061804