Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4695 87.8 2e-12 >seq4695 Length=2473718 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 12955 TTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCAT 13014 ||||| ||| || | || | || | |||||| |||||||| || ||||||| ||||| Sbjct 1456713 TTTTTCACATCCCAGCTCAACTAGAAGTCTGTCTGCAACAAATTCAATGTACTTCTTCAT 1456772 Query 13015 TAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttC 13074 | ||||| ||||| || || || || ||||||| || ||||| | || | || ||| Sbjct 1456773 CAGCTCACAATTCATACCAATCAAGTTGACAGGCAGGGCATCTGTAAGGAATTCTTGTTC 1456832 Query 13075 TATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTA-ATGGAGGATTTGATA 13133 || |||| || || ||| ||| || | | || || || |||| ||| || Sbjct 1456833 AATGGCAACAGCATCTTTAATTATTTCATAAACTCTGT-CTTTAGATGGTTTATTGATTA 1456891 Query 13134 GATGCTTAAACATCATACATGCAAAATCACAGTGCAATCC 13173 ||| || ||||||| || ||||||||||| || | ||| Sbjct 1456892 AATGTTTGAACATCAGGCAAGCAAAATCACAATGAAGTCC 1456931 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 || || ||||| || | ||| |||||||| || || | ||||||||| || ||||| Sbjct 1457599 ATGTAGGTATCAATAAGTAAACTATACATCTCACTGTGCACATTTTCCATGGCAATTTGA 1457658 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 |||||||||||||| | |||||||| |||||||| || Sbjct 1457659 AAACCATAAAAACAACGAGCCTCTGTCACCTGAACCTC 1457696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430957066719846