Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4782 194 4e-44 seq1115 181 2e-40 seq1850 105 2e-17 seq4695 96.9 8e-15 seq4524 96.9 8e-15 seq2848 89.7 1e-12 >seq4782 Length=111569 Score = 194 bits (214), Expect = 4e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || ||||||| || | ||||| ||||| ||||| |||||||| || Sbjct 12882 CCACCTCTGAGTCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAG 12823 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | ||||| || || || || ||||||||||| | ||||||||| |||||||| Sbjct 12822 AGAGTGCGCCCGTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGA 12763 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||||||||| || || ||||| |||||||| | ||||| || || || ||| Sbjct 12762 ATACCTTCTTTATCCTGGATTTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAACC 12703 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| ||||| || || || || || ||||| |||||||| Sbjct 12702 TCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAAATCTGCAT 12656 >seq1115 Length=79802 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| ||| | |||||||||||||| || || ||||| || || || | ||| ||||| Sbjct 1821 TACTAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTACGACCATCTTC 1762 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 |||||||| |||||||| || || | ||| ||||| || || || |||||||| || || Sbjct 1761 AAGTTGTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGGATACCTTCTTTGTCTTG 1702 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||| ||||| |||||||| | ||| || ||||| || || || || || || || Sbjct 1701 AATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATTGTTTT 1642 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||||||||| ||||| |||||||| Sbjct 1641 ACCAGTAAGTGTTTTCACAAAGATCTGCAT 1612 Score = 95.1 bits (104), Expect = 3e-14 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| ||||| || || || |||||||| || |||||||| ||||| |||||||| | ||| Sbjct 1512 CTGCTGATCGGGTGGGATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTTTCAATGGT 1453 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 || || || || || || ||||||||||| || || | || || ||||| ||||| Sbjct 1452 GTCAGATGGCTCAACTTCAAGAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTG 1393 Query 104557 CATTTTG-TGTA 104567 ||| ||| |||| Sbjct 1392 CATATTGCTGTA 1381 >seq1850 Length=1026905 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || ||||||| || | ||||| ||||| ||||| |||||||| || Sbjct 5382 CCACCTCTGAGTCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAG 5323 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | ||||| || || || || ||||||||||| | ||||||||| |||||||| Sbjct 5322 AGAGTGCGCCCGTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGA 5263 Query 104453 ATTCCT 104458 || ||| Sbjct 5262 ATACCT 5257 >seq4695 Length=2473718 Score = 96.9 bits (106), Expect = 8e-15 Identities = 138/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCCT---TAC 269125 ||||||||||| || | |||||||| | || ||||| ||| | || | ||| Sbjct 1457445 TGTGTGAGAAAGAAGGCAGAATGGGCCATTAAGTGGATTGGTGATGCTGAGCATCCATAC 1457386 Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 | ||||| | || |||||||| ||||| ||||| || || || || || || || || Sbjct 1457385 AGTGAAAGAGTTGTAGCTTTTGCAGCTGTGGAAGGGATTTTTTTCTCTGGATCCTTCGCT 1457326 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || || ||||||||||| || || || ||||||| || ||||||||| || || | Sbjct 1457325 GCAATTTTTTGGTTGAAAAAGAGGGGGATTATGCCTGGCTTAACTTTCAGCAATGAGCTT 1457266 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 1457265 ATCAGCAGAGATGA 1457252 >seq4524 Length=299079 Score = 96.9 bits (106), Expect = 8e-15 Identities = 127/172 (74%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 238605 CAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAA 238664 ||||| ||| |||| | | ||| |||||||| ||||| | || ||||| |||||||| Sbjct 20755 CAGATCCAACTGGTCACAGAAGGGAAAATGCACGGTTTCCTGCGTATGTACTGGGCTAAG 20696 Query 238665 AAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGAT-ATAGTATTTATCTGAA 238723 || || || |||||||| | || || |||| || ||| | | || ||||| ||||| Sbjct 20695 AAAATTCTGGAATGGACCAAGTCGCCGGAGGATGC-CTTGGCTGATGCCATTTACCTGAA 20637 Query 238724 CGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGTT-GTAT 238774 |||||| ||| | | || || | ||||| || || |||||||||| |||| Sbjct 20636 CGATAAGTACAATTTAGATGGCAGAGATCCCAATGGCTACGTAGGTTAGTAT 20585 Score = 86.0 bits (94), Expect = 1e-11 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 238766 AGGTTGTATGTGGTCAATATGTGGATTACACGA-TAGGGCATGGTCTGAGAGACCTATAT 238824 |||||||||||||||||||||||| |||| || | ||| ||| | ||||| || | | Sbjct 20275 AGGTTGTATGTGGTCAATATGTGGCATACATGACCAAGGC-TGGGCAGAGAGGGCTGTGT 20217 Query 238825 TTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCTT 238884 ||||||| || | |||||||| || | ||| ||| || ||||||||| ||||| Sbjct 20216 TTGGAAAGATTCGGTACATGAACTACGCAGGCTGCAAGCGCAAGTTTGATGTAGCTGCTT 20157 Query 238885 TTATCAGTAAATACAG 238900 || ||| || ||||| Sbjct 20156 TTGCCAGGAAGTACAG 20141 >seq2848 Length=574677 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||||||||| |||||||| || || | ||| ||||| ||||| || |||||||| || Sbjct 156022 TTCTGAATATTGTAGTCAGACAGCGTACGACCATCTTCAAGTTGCTTACCAGCAAAGATC 155963 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTC 104460 | |||||| |||||||| || || ||||| Sbjct 155962 AACCTCTGCTGATCAGGGGGAATCCCTTC 155934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151327249695684