Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2861 96.9 2e-15 seq4681 93.3 2e-14 seq942 91.5 8e-14 seq3761 89.7 3e-13 seq1711 89.7 3e-13 seq1420 89.7 3e-13 seq1309 89.7 3e-13 seq4694 87.8 9e-13 seq4518 87.8 9e-13 seq4281 87.8 9e-13 seq4184 87.8 9e-13 seq909 87.8 9e-13 >seq2861 Length=1922285 Score = 96.9 bits (106), Expect = 2e-15 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 838310 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 838369 Query 11528 CCGTCGACGA 11537 |||| ||||| Sbjct 838370 CCGTTGACGA 838379 >seq4681 Length=1076831 Score = 93.3 bits (102), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||| || || ||||||| | |||||| || |||||||||| |||| |||||||| Sbjct 143756 ATAAAAATATTAAAAAAACT--TTGGCCAGTGTGGGGATCGAACCCACGACATTCGCGTT 143699 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||| |||| Sbjct 143698 ATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 143662 >seq942 Length=837558 Score = 91.5 bits (100), Expect = 8e-14 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||||||| | |||||||||| |||| |||||||||||||||||||| Sbjct 277897 AAAAAT--AATTGGCCAGTATGGGGATCGAACCCACGACATTCGCGTTATTAGCACGACG 277954 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| |||||||||||||| ||||| Sbjct 277955 CTCTAACCAACTGAGCTAACCGGCCG 277980 Score = 89.7 bits (98), Expect = 3e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 275768 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 275827 Query 11528 CCG 11530 ||| Sbjct 275828 CCG 275830 Score = 89.7 bits (98), Expect = 3e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 283943 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 284002 Query 11528 CCG 11530 ||| Sbjct 284003 CCG 284005 >seq3761 Length=513909 Score = 89.7 bits (98), Expect = 3e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 423466 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 423525 Query 11528 CCG 11530 ||| Sbjct 423526 CCG 423528 Score = 86.0 bits (94), Expect = 3e-12 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||||| |||||| | |||||||||| |||| |||||||| ||||||||||| Sbjct 204800 AAAAATCA--TTGGCCAGTATGGGGATCGAACCCACGACATTCGCGTTGTTAGCACGACG 204743 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 204742 CTCTAACCAACTGAGCTAACCGGCC 204718 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||| | |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 431679 GGATCGAAACCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 431738 Query 11528 CC 11529 || Sbjct 431739 CC 431740 >seq1711 Length=690402 Score = 89.7 bits (98), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 11437 AATTAA--TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||||| ||||||| | | ||||| | |||||||||| |||| |||||||||| Sbjct 629428 AATTAAACTAAAAAAAAAGACTGGCCAGTATGGGGATCGAACCCACGACATTCGCGTTAT 629369 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||| |||| Sbjct 629368 TAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 629334 >seq1420 Length=1535805 Score = 89.7 bits (98), Expect = 3e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 371132 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 371191 Query 11528 CCG 11530 ||| Sbjct 371192 CCG 371194 >seq1309 Length=57342 Score = 89.7 bits (98), Expect = 3e-13 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| ||| |||||| | |||||||||| |||| |||||||||||||||||| Sbjct 33542 TAAAAAGTCA--TTGGCCAGTATGGGGATCGAACCCACGACATTCGCGTTATTAGCACGA 33485 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||| |||| Sbjct 33484 CGCTCTAACCAACTGAGCTAACCGGCC 33458 >seq4694 Length=834279 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 716930 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 716989 Query 11528 CC 11529 || Sbjct 716990 CC 716991 >seq4518 Length=300245 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| || |||||||||| |||| |||||||||||||||||||||||| ||||| Sbjct 156100 TTGGCCAGTGTGGGGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAA 156041 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 156040 CTGAGCTAACCGGCC 156026 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 158735 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 158794 Query 11528 CC 11529 || Sbjct 158795 CC 158796 >seq4281 Length=391355 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 362042 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 362101 Query 11528 CC 11529 || Sbjct 362102 CC 362103 >seq4184 Length=440380 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 374807 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 374866 Query 11528 CC 11529 || Sbjct 374867 CC 374868 >seq909 Length=818916 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 703924 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 703983 Query 11528 CC 11529 || Sbjct 703984 CC 703985 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261475829465548