Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2222 214 3e-51 seq1004 168 1e-37 >seq2222 Length=5634 Score = 214 bits (236), Expect = 3e-51 Identities = 208/268 (78%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||||| ||||||||||| |||||||| ||||| || || Sbjct 435 CGCCAAGCGTCACCGAAAAGTACTTCGTGATAACATCCAGGGAATCACGAAGCCGGCGAT 376 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| || || || ||||||||| |||| || || |||| || |||| Sbjct 375 CCGTCGTCTTGCTCGCCGAGGCGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 316 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||| ||||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 315 TCGCGGTGTTCTGAAGGTCTTCCTCGAGAACGTCATCCGCGACGCAGTCACCTACACCGA 256 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| ||||||| || ||||||| ||||| Sbjct 255 GCACGCCAAGCGAAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTGAAACGCCAAGG 196 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || || || ||||| Sbjct 195 CCGTACTCTGTACGGATTCGGCGGTTAA 168 >seq1004 Length=93471 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | || |||||||||||||| ||||||||||| ||||| Sbjct 7193 CGCCAAGCGTCATCGCAAAGTATTGCGTGATAACATCCAAGGCATCACCAAGCCTGCTAT 7252 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || | | ||||| || || ||| ||||||| | ||||||| |||| Sbjct 7253 TCGTCGTCTTGCACACAGAGGTGGTGTGAAACGTATCTCTGGTCTCATCTATGAGGAGAC 7312 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || ||||| | ||||| | | ||| |||| ||||| || ||| ||||| Sbjct 7313 CAGGGGCGTCCTGAAGGTTTTCCTTGAAAACGTCATCCGAGATGCCGTCACCTACACCGA 7372 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||||||||| |||||||| | ||||| || ||||||||||||| Sbjct 7373 GCATGCCAAGAGGAAGACTGTCACTGCCATGGATGTAGTCTACGCCCTGAAACGTCAAGG 7432 Query 16672 CCG 16674 ||| Sbjct 7433 CCG 7435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070790297339