Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4695 158 2e-33 seq1700 122 1e-22 >seq4695 Length=2473718 Score = 158 bits (174), Expect = 2e-33 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||||||| ||||| ||||| || ||||| |||||||| || || | ||||| |||| Sbjct 1457836 CCAAATTCTCATTGACTATCCCATCACTTGCTGCAAAGAATGCAAGGACATGGGAAATAA 1457895 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 ||| |||||| |||||| | || || | ||| | || | |||||||||| ||| || | Sbjct 1457896 AATGTTTTTCATCTGGTTTCAGCTTTTCCCACTGATCAAGGTCTTTAGATAAATCCACCT 1457955 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 |||| ||||||| ||||| |||||||| ||||| ||||| | ||||||||||| || | Sbjct 1457956 CTTCTGCTGTCCAGAATGAAGCCTCTGCTTTTTTGTACATCTGCCAGATGTCATGGTACT 1458015 Query 33866 GGATTGGGAAAATAACAAATCT 33887 | || ||||| | |||||||| Sbjct 1458016 GAATGGGGAACAAGACAAATCT 1458037 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 33108 TTTTTTAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCAT 33167 ||||| | |||||| ||| | | ||| || || || ||||| || || | ||||| Sbjct 1456713 TTTTTCACATCCCAGCTCAACTAGAAGTCTGTCTGCAACAAATTCAATGTACTTCTTCAT 1456772 Query 33168 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTC 33227 || ||||||||||| || || | || || || || || | ||||| ||||||||||| Sbjct 1456773 CAGCTCACAATTCATACCAATCAAGTTGACAGGCAGGGCATCTGTAAGGAATTCTTGTTC 1456832 Query 33228 AATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAA 33287 ||||| || |||||| | || || ||| | |||| | ||| || | ||| Sbjct 1456833 AATGGCAACAGCATCTTTAATTATTTCATAAACTCTGTCTTTAGATGGTTTATTGATTAA 1456892 Query 33288 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328 |||||| ||||||| || || ||||| || || || |||| Sbjct 1456893 ATGTTTGAACATCAGGCAAGCAAAATCACAATGAAGTCCCT 1456933 >seq1700 Length=809593 Score = 122 bits (134), Expect = 1e-22 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || ||||| || |||||||||| ||| ||| |||||||||| |||||||||| | | Sbjct 377256 TCAAACTCTTCACCCCAAACATCTGCCAGTCCTGGACATTCATTGGGACACATCAGAGTC 377197 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 || ||||| | | || || || ||| ||||||||||| ||||| ||||| ||| || Sbjct 377196 CAGTCTCCATTCTGCTCTACACGCCGCATGAAGAGATCAGGGATCCAGAGAGC-ATAGAA 377138 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 |||||||| | ||| || || || || |||||||| || || | ||| || || | | Sbjct 377137 AAGATCTCTTGCTCTCTGCTCTTCTTTCCCTGTATTTTTCTTCAAATCAAGAAAGTCAAA 377078 Query 63317 AATATCAGAATGCCACGGTTC 63337 ||||| | |||||| || || Sbjct 377077 GATATCCGCATGCCATGGCTC 377057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622909644070680