Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1700 95.1 3e-14 seq4245 89.7 1e-12 >seq1700 Length=809593 Score = 95.1 bits (104), Expect = 3e-14 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 || || ||||| || ||||| ||||| ||||| ||||| ||||| |||||||| | Sbjct 377036 GGTGCCTTTGCAATCTATCTAGAGCCATGGCATGCGGATATCTTTGACTTTCTTGATTTG 377095 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 |||||| || || ||||| || | | ||| | ||||| |||||||| || ||| | Sbjct 377096 AAGAAAAATACAGGGAAAGAAGAGCAGAGAGCAAGAGATCTTTTCTATGCTCTCTGGATC 377155 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCACA 364016 |||| | || ||| ||| || ||| ||| || | ||| | || | || || | Sbjct 377156 CCTGATCTCTTCATGCGGCGTGTAGAG-CAGAATGGAGACTGGACTCTGATGTGTCCCAA 377214 Query 364017 CGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTAT--GTTGCTCTATACGAAAAG 364074 ||||||||||| || | ||||| |||||||| || | | | ||||||| || ||| Sbjct 377215 TGAATGTCCAGGACTGGCAGATGTTTGGGGTGAAGAGTTTGAGAAGCTCTAT--GAGAAG 377272 Query 364075 TA 364076 || Sbjct 377273 TA 377274 Score = 86.0 bits (94), Expect = 2e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || || ||| | |||| | | || || || || |||| |||||||| || || || ||| Sbjct 379089 GCCCAAAAGTTGTGGTATACAATTATTGAGTCTCAGACAGAGACAGGGACCCCTTACATG 379148 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 ||||||| || ||||||||||| || |||||||| | ||||| || ||| | Sbjct 379149 CTGTACAAGGACAGTTGCAACCGCAAATCTAACCAGCAAAATCTTGGAACCATTAAATGC 379208 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 |||||| | || || || ||| | || |||| ||||| || ||| Sbjct 379209 AGCAACTTGTGCACAGAAATTGTGGAGTACAGTGCTCCTGATGAG 379253 >seq4245 Length=625183 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| || | ||||| || || || ||||| || ||| | ||||| ||| ||||| Sbjct 241794 TTTCCTCTCTTGACAACTAAACGGGTATTTTGGAGAGGTATTCTAGAAGAGCTTTTGTGG 241853 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 |||||||| ||| ||||||| |||| || || | |||| |||| | || |||||| Sbjct 241854 TTTATTCGGGGATCAACAAATGGCCATGAGCTGGCTGAAAAAGATGTTCATATATGGGAT 241913 Query 111435 GGAAATGGATCACGTGACTTTCTAGAT 111461 | |||||| || || || ||| ||||| Sbjct 241914 GCAAATGGGTCTCGAGAATTTTTAGAT 241940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303273059671586