Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1115 116 3e-21 seq4782 86.0 5e-12 >seq1115 Length=79802 Score = 116 bits (128), Expect = 3e-21 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| |||||| | ||||| ||| | || ||| | ||||| || ||| | Sbjct 1612 ATGCAGATCTTTGTGAAAACACTTACTGGTAAAACAATCACCCTTGAAGTTGAA-CCATC 1670 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | |||||| |||||| ||||||||||| || || |||||||| Sbjct 1671 TGACACCATTGAAAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCCGATCA 1730 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTAT 24167 ||| | || || | | ||||| ||||| |||||| | | | || |||| || || Sbjct 1731 GCAGCGTCTTATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACACTGTCA--GACTAC 1788 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 ||||| || ||||||||||| | |||||||| ||| Sbjct 1789 AACATCCAGAAAGAATCTACTCTGCATTTAGTATTA 1824 >seq4782 Length=111569 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | |||||| | || || ||| ||| Sbjct 12656 ATGCAGATTTTTGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTTGAGCCCAGT 12715 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | |||||| || || || |||||||| || ||||| || ||| Sbjct 12716 GATACAATTGAAAATGTCAAAGCTAAAATCCAGGATAAAGAAGGTATTCCTCCTGACCAA 12775 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| | || ||||| || || || | | | || || |||||| Sbjct 12776 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGACGGGCGCACTCTCTCAGACTATAAC 12835 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||| ||||| | || ||||| | ||| | ||||| || Sbjct 12836 ATTCAAAAAGAGTCTACTCTCCACTTAGTACTGAGACTCAGAGGTGG 12882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429910728227565