Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4782 109 5e-19 seq1700 87.8 2e-12 seq1115 82.4 7e-11 >seq4782 Length=111569 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 ||| ||||| || | || ||||| ||||||||||| || || | |||||| ||| Sbjct 12868 CAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCCGTC 12809 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| |||||||| || || | || || | ||| ||||| ||||| || |||||||| || Sbjct 12808 CTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCTTTATC 12749 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 |||||| |||| | || | ||||| ||| ||| | || | ||||| ||| Sbjct 12748 CTGGATTTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAACCTCAAGGGTAATGGT 12689 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || || || || || || || ||||||||||||| Sbjct 12688 CTTGCCCGTCAGGGTCTTCACAAAAATCTGCATGA 12654 >seq1700 Length=809593 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 145667 CTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGA 145726 ||||| | || || || | |||||| ||||| ||||| |||||||| ||||||||||| Sbjct 379240 CTGTACTCCACAATTTCTGTGCACAAGTTGCTGCATTTAATGGTTCCAAGATTTTGCTGG 379181 Query 145727 TTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 ||| ||| | |||||| ||||||||| |||||||| || Sbjct 379180 TTAGATTTGCGGTTGCAACTGTCCTTGTACAGCATGTAAGG 379140 >seq1115 Length=79802 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| | |||||||| | || || || || || |||||||| || Sbjct 1839 GCCACCACGAAGACGTAATACTAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTGA 1780 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || || || ||||| || |||| | ||||||||| || || || Sbjct 1779 CAGTGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGG 1720 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| ||||||||||| ||| | | || |||| | || | || || | | || | Sbjct 1719 GATACCTTCTTTGTC-TTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCAA 1661 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||||| || || ||||| || || |||||||| Sbjct 1660 CTTCAAGGGTGATTGTTTTACCAGTAAGTGTTTTCACAAAGATCTGCAT 1612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471984343528320