Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1115 125 6e-24 seq4782 104 2e-17 >seq1115 Length=79802 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || |||||| | ||||| | ||||| || | ||| Sbjct 1612 ATGCAGATCTTTGTGAAAACACTTACTGGTAAAACAATCACCCTTGAAGTTGAACCATCT 1671 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || | ||| ||||||||||| || ||||| || Sbjct 1672 GACACCATTGAAAATGTCA---AAGCTAAGATTCAA-GACAAAGAAGGTATCCCACCCGA 1727 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| |||| ||||| ||||||||| | ||||||| ||| || || || || Sbjct 1728 TCAGCAGCGTCTTATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACACTGTCAGACTA 1787 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || || |||||||| || || |||||||| Sbjct 1788 CAACATCCAGAAAGAATCTACTCTGCATTTAGT 1820 >seq4782 Length=111569 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||| || | || || ||| | | Sbjct 12656 ATGCAGATTTTTGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTTGAGCCCAGT 12715 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| || || |||||||| ||||| ||||| Sbjct 12716 GATACAATTGAAAATGTCA---AAGCTAAAATCCAG-GATAAAGAAGGTATTCCTCCTGA 12771 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||| || | |||||||| || || || | || || | |||||| | || || Sbjct 12772 CCAACAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGACGGGCGCACTCTCTCAGACTA 12831 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || || || ||||| || || || ||||| || Sbjct 12832 TAACATTCAAAAAGAGTCTACTCTCCACTTAGTACTGAGACTCAGAGGTGG 12882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433302528844745