Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10]
4,823 sequences; 909,764,068 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq1115 125 6e-24
seq4782 104 2e-17
>seq1115
Length=79802
Score = 125 bits (138), Expect = 6e-24
Identities = 157/213 (74%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | || |||||| | ||||| | ||||| || | |||
Sbjct 1612 ATGCAGATCTTTGTGAAAACACTTACTGGTAAAACAATCACCCTTGAAGTTGAACCATCT 1671
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| || || |||| |||| || | ||| ||||||||||| || ||||| ||
Sbjct 1672 GACACCATTGAAAATGTCA---AAGCTAAGATTCAA-GACAAAGAAGGTATCCCACCCGA 1727
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||||| |||| ||||| ||||||||| | ||||||| ||| || || || ||
Sbjct 1728 TCAGCAGCGTCTTATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACACTGTCAGACTA 1787
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207
||| || || |||||||| || || ||||||||
Sbjct 1788 CAACATCCAGAAAGAATCTACTCTGCATTTAGT 1820
>seq4782
Length=111569
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||| || || |||| || | || || ||| | |
Sbjct 12656 ATGCAGATTTTTGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTTGAGCCCAGT 12715
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || |||| |||| |||| || || |||||||| ||||| |||||
Sbjct 12716 GATACAATTGAAAATGTCA---AAGCTAAAATCCAG-GATAAAGAAGGTATTCCTCCTGA 12771
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||||| || | |||||||| || || || | || || | |||||| | || ||
Sbjct 12772 CCAACAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGACGGGCGCACTCTCTCAGACTA 12831
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| ||||||||||| || || || || ||||| || || || ||||| ||
Sbjct 12832 TAACATTCAAAAAGAGTCTACTCTCCACTTAGTACTGAGACTCAGAGGTGG 12882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433302528844745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |