Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1115 154 3e-32 seq4782 132 9e-26 seq1850 86.0 1e-11 >seq1115 Length=79802 Score = 154 bits (170), Expect = 3e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | || || ||||| || ||||| || || || || || ||||| |||||||| | Sbjct 1846 TTTAGCTGCCACCACGAAGACGTAATACTAAATGCAGAGTAGATTCTTTCTGGATGTTGT 1787 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || ||||| | |||||||| | || || || || || || || | || || | Sbjct 1786 AGTCTGACAGTGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGCTGCTGAT 1727 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 ||||||| || ||||| |||||||||||||| || ||||| || |||||||| | || Sbjct 1726 CGGGTGGGATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATG 1667 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||| | |||||| ||||| || || || || || || || |||||||| Sbjct 1666 GTTCAACTTCAAGGGTGATTGTTTTACCAGTAAGTGTTTTCACAAAGATCTGCAT 1612 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || |||||||| || ||||| |||||||||||||| || ||||| || |||||| Sbjct 1511 TGCTGATCGGGTGGGATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTTTCAATGGTG 1452 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | || || ||||| | || || || || ||||| | |||||| || || |||||| Sbjct 1451 TCAGATGGCTCAACTTCAAGAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGC 1392 Query 68460 ATTATGCT 68467 || |||| Sbjct 1391 ATATTGCT 1384 >seq4782 Length=111569 Score = 132 bits (146), Expect = 9e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 || ||| ||||| || || ||||||||||| |||||||| || ||||| || | ||| || Sbjct 12868 CAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCCGTC 12809 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 || | |||||| || || || || | || |||||||| || ||||| ||||| || || Sbjct 12808 CTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCTTTATC 12749 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 || || || || ||||| || || || || | || || || | ||| ||||| Sbjct 12748 CTGGATTTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAACCTCAAGGGTAATGGT 12689 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || ||||| |||||||| || || |||||||| |||| Sbjct 12688 CTTGCCCGTCAGGGTCTTCACAAAAATCTGCATGATGC 12651 >seq1850 Length=1026905 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 || ||| ||||| || || ||||||||||| |||||||| || ||||| || | ||| || Sbjct 5368 CAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCCGTC 5309 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 || | |||||| || || || || | || |||||||| || ||||| ||| Sbjct 5308 CTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCT 5257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921566837689560