Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4782 145 8e-30 seq1700 102 8e-17 seq1850 95.1 1e-14 >seq4782 Length=111569 Score = 145 bits (160), Expect = 8e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| || | || || |||||||||||||| || |||| || |||||| | Sbjct 12871 TCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCC 12812 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||| ||||||||||| || ||| |||| | || ||| ||||| |||||||| |||||||| Sbjct 12811 GTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCTTT 12752 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 || || | |||| ||||| ||| || | |||||||| || || || || | || | Sbjct 12751 ATCCTGGA-TTTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAACCTCAAGGGTAA 12693 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| |||| || || || ||||| ||||| Sbjct 12692 TGGTCTTGCCCGTCAGGGTCTTCACAAAAATCTGCAT 12656 >seq1700 Length=809593 Score = 102 bits (112), Expect = 8e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 154611 TCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCC 154670 || |||| | |||||| | ||||||||||| |||||| || |||||| |||||| || Sbjct 379252 TCATCAGGAGCACTGTACTCCACAATTTCTGTGCACAAGTTGCTGCATTTAATGGTTCCA 379193 Query 154671 AGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCC 154730 || |||| ||| || |||||| |||||| ||| ||||||| ||||| ||||| || Sbjct 379192 AGATTTTGCTGGTTAGATTTGCGGTTGCAACTGTCCTTGTACAGCATGTAAGGGGTCCCT 379133 Query 154731 GTTTCCACTTGGGTTTCAATAATTGT 154756 || || || | ||||||||||| Sbjct 379132 GTCTCTGTCTGAGACTCAATAATTGT 379107 >seq1850 Length=1026905 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| || | || || |||||||||||||| || |||| || |||||| | Sbjct 5371 TCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCC 5312 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 ||| ||||||||||| || ||| |||| | || ||| ||||| |||||||| ||| Sbjct 5311 GTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCT 5257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499614677664120