Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1115 116 4e-21 seq4782 104 2e-17 >seq1115 Length=79802 Score = 116 bits (128), Expect = 4e-21 Identities = 178/250 (71%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 138371 ATAAACTGTAGCC-----GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTC 138425 ||||||| ||||| || ||| || || | ||| || |||||||| | | || || Sbjct 1859 ATAAACT-TAGCCCTTTAGCTGCCACCACGAAGACGTAATACTAAATGCAGAGTAGATTC 1801 Query 138426 CTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGAT 138485 || || ||||||||||| || ||||| || || |||||||| || | | |||| Sbjct 1800 TTTCTGGATGTTGTAGTCTGACAGTGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGAT 1741 Query 138486 TAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTT 138544 |||||||| || || || || |||||||||||||| ||| | || | ||| | | || Sbjct 1740 AAGACGCTGCTGATCGGGTGGGATACCTTCTTTGTCT-TGAATCTTAGCTTTGACATTTT 1682 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | |||||| | | || || || | || | ||||||||||| || ||||| |||| Sbjct 1681 CAATGGTGTCAGATGGTTCAACTTCAAGGGTGATTGTTTTACCAGTAAGTGTTTTCACAA 1622 Query 138605 AAATCTGCAT 138614 | |||||||| Sbjct 1621 AGATCTGCAT 1612 >seq4782 Length=111569 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| ||||||||||| ||||| | ||| ||| |||||| || || ||||| | | Sbjct 12849 GACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCCGTCCTCAAGCTGCTTACCAGCA 12790 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || | | ||||||||| ||||| ||||||||||| || |||||| ||| | Sbjct 12789 AAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATTTTAGCTTTGACA 12730 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | ||| ||||| | || | || || || ||||| || || Sbjct 12729 TTTTCAATTGTATCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTC 12670 Query 138601 ACAAAAATCTGCATG 138615 ||||||||||||||| Sbjct 12669 ACAAAAATCTGCATG 12655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496232481580560