Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10]
4,823 sequences; 909,764,068 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1115 102 8e-17
seq4782 87.8 2e-12
>seq1115
Length=79802
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || || || ||||| | ||||| ||||| || || ||||| || |
Sbjct 1838 CCACCACGAAGACGTAATACTAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAC 1779
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || || ||||| ||||| |||| | |||||||||||||| ||
Sbjct 1778 AGTGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGG 1719
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || || |||| | ||| | | || |||| | ||| | |||||| | || ||
Sbjct 1718 ATACCTTCTTTGT-CTTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCAAC 1660
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | ||| | ||||| || || || ||||| ||||| ||||||||
Sbjct 1659 TTCAAGGGTGATTGTTTTACCAGTAAGTGTTTTCACAAAGATCTGCAT 1612
>seq4782
Length=111569
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||||||||||||||| || || || | ||||| || || ||||| || |||
Sbjct 12852 GTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCCGTCCTCAAGCTGCTTACCA 12793
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| | ||||| | ||| || || ||||| || || || || ||| |||||| |||
Sbjct 12792 GCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATTTTAGCTTTG 12733
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | ||| | || || | ||| || || | ||| | || ||||| ||||| ||
Sbjct 12732 ACATTTTCAATTGTATCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTC 12673
Query 127097 TTTACAAAAATCTGCATG 127114
|| |||||||||||||||
Sbjct 12672 TTCACAAAAATCTGCATG 12655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475472133245520
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |