Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1115 109 1e-18 seq4782 98.7 2e-15 >seq1115 Length=79802 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || || || |||| ||||||||| | || || | |||||||| || || Sbjct 1814 TGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTACGACCATCTTCAAGTTGT 1755 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| ||||||||||| || || || |||||| || |||||||| Sbjct 1754 TTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGGATACCTTCTTTGTCTTGAATCTTA 1695 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || || ||| | |||||| | || ||| || || | ||||| || ||||| || Sbjct 1694 GCTTTGACATTTTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATTGTTTTACCAGTA 1635 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || || Sbjct 1634 AGTGTTTTCACAAAGATCTG 1615 >seq4782 Length=111569 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||||||| || | ||||||||| ||||| ||||| | ||| ||||| | | ||| | Sbjct 12873 AGTCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGC 12814 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || || |||||||| || || || || | | ||| ||||| ||| ||| |||||| Sbjct 12813 CCGTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCT 12754 Query 199532 CGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| || ||| |||| || ||| | || || | | || || || | || Sbjct 12753 TTATCCTGGAT-TTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAACCTCAAGGGT 12695 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| || || ||||||||||| || Sbjct 12694 AATGGTCTTGCCCGTCAGGGTCTTCACAAAAATCTG 12659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178848748908141