Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10]
4,823 sequences; 909,764,068 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1700 87.8 2e-12
>seq1700
Length=809593
Score = 87.8 bits (96), Expect = 2e-12
Identities = 133/188 (71%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 105887 AGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTC 105946
||||| | ||||||||| ||| || || | || |||||| || || || |
Sbjct 382815 AGATGATGGTTGACAATTTGAAATTCCCCTGAAAGTACTCTTCTAGTGTATATATTGCTT 382756
Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006
||||| | ||||| | ||||||| || || | ||||| || ||||| ||||||||||||
Sbjct 382755 GTGTATGCTTCAATGGATTCATTGTTGCCGAGAATTTGAGCTGTGGATGCTGTTGGCATT 382696
Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACC---CTTTTCCTTGATGCGTTCCTTGAGAACA 106063
|||||||| | |||||||| | || || |||| | ||||||| | ||| ||
Sbjct 382695 GGTGCCATGAGGAGACTGTTTCTAACGCCAAACTTTGC---AATGCGTTTTCTAAGACCA 382639
Query 106064 TCCCAGTC 106071
||||| ||
Sbjct 382638 TCCCAATC 382631
Score = 84.2 bits (92), Expect = 3e-11
Identities = 151/219 (69%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 106095 CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154
||||||||||| |||||| | |||| ||| ||| | || || | |||||||| |
Sbjct 380622 CCCACATATCATGTTGAAGAATTCCTTTAGACACAGGACAGCCTTCGTAAGTCTCATAAG 380563
Query 106155 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 106214
|| | ||| |||||||||||||| || || || | || |||||||| ||||
Sbjct 380562 TCCCATACTTTTCTGCCAATTCACAGCTGGCATCAAGTGCAGCAAAGTACATGGTCTCAA 380503
Query 106215 AGATACGAGCATTCATCTCCTTGGCTTCA--TCTGAATCAAATGCGTAGCGGCACAAAAT 106272
| || ||||| || ||||||||| ||| || |||| || | ||||||
Sbjct 380502 AAATCTCTTTATTCAACTGTTTGGCTTCAGGGCTG--TCGAATGGATACCTCATCAAAAT 380445
Query 106273 AAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 106311
|||| |||| || | ||| ||||| || | ||||||||
Sbjct 380444 AAATGCATCTGCCAAACCCTGAACTCCAAGCCCAATAGG 380406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589945231532520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |