Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1700 87.8 2e-12 >seq1700 Length=809593 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 105887 AGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTC 105946 ||||| | ||||||||| ||| || || | || |||||| || || || | Sbjct 382815 AGATGATGGTTGACAATTTGAAATTCCCCTGAAAGTACTCTTCTAGTGTATATATTGCTT 382756 Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006 ||||| | ||||| | ||||||| || || | ||||| || ||||| |||||||||||| Sbjct 382755 GTGTATGCTTCAATGGATTCATTGTTGCCGAGAATTTGAGCTGTGGATGCTGTTGGCATT 382696 Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACC---CTTTTCCTTGATGCGTTCCTTGAGAACA 106063 |||||||| | |||||||| | || || |||| | ||||||| | ||| || Sbjct 382695 GGTGCCATGAGGAGACTGTTTCTAACGCCAAACTTTGC---AATGCGTTTTCTAAGACCA 382639 Query 106064 TCCCAGTC 106071 ||||| || Sbjct 382638 TCCCAATC 382631 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 106095 CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154 ||||||||||| |||||| | |||| ||| ||| | || || | |||||||| | Sbjct 380622 CCCACATATCATGTTGAAGAATTCCTTTAGACACAGGACAGCCTTCGTAAGTCTCATAAG 380563 Query 106155 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 106214 || | ||| |||||||||||||| || || || | || |||||||| |||| Sbjct 380562 TCCCATACTTTTCTGCCAATTCACAGCTGGCATCAAGTGCAGCAAAGTACATGGTCTCAA 380503 Query 106215 AGATACGAGCATTCATCTCCTTGGCTTCA--TCTGAATCAAATGCGTAGCGGCACAAAAT 106272 | || ||||| || ||||||||| ||| || |||| || | |||||| Sbjct 380502 AAATCTCTTTATTCAACTGTTTGGCTTCAGGGCTG--TCGAATGGATACCTCATCAAAAT 380445 Query 106273 AAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 106311 |||| |||| || | ||| ||||| || | |||||||| Sbjct 380444 AAATGCATCTGCCAAACCCTGAACTCCAAGCCCAATAGG 380406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589945231532520