Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq66 87.8 2e-12 >seq66 Length=970343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 158575 AGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATC 158634 ||| | || |||||||| ||||| ||||| |||||||||||||| ||||||||||| || Sbjct 228831 AGACTTGCTCTACAGACAAGAGAACAGCACATCAGAAGAGACAAGGCAACCAGTAATATA 228890 Query 158635 TGCACAGCACA 158645 ||||||||||| Sbjct 228891 TGCACAGCACA 228901 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 159686 GTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATG 159745 |||| ||||| ||||||| | ||| | ||| | || ||||| |||||||||||||||| Sbjct 240064 GTGATTATGGCTCAGATGTGTCTCACTTGAACCTGCACAAGACCTTCTGTATTCCACATG 240123 Query 159746 GAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||| ||||| || | || |||||||| || Sbjct 240124 GAGGTGGTGGTCCAGGAGCTGGACCTATTGGAGT 240157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588015747863280