Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1115 96.9 2e-15 seq4782 87.8 1e-12 >seq1115 Length=79802 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || || | || |||| || || ||||| || ||||| Sbjct 1803 TTCTTTCTGGATGTTGTAGTCTGACAGTGTACGACCATCTTCAAGTTGTTTGCCAGCAAA 1744 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | || || ||||| |||||| |||||| Sbjct 1743 GATAAGACGCTGCTGATCGGGTGGGATACCTTCTTTGTCTTGAATCTTAGCTTTGACATT 1684 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| | ||||| || | ||| || ||||| || || || || ||||| Sbjct 1683 TTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATTGTTTTACCAGTAAGTGTTTTCAC 1624 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 1623 AAAGATCTGCATA 1611 >seq4782 Length=111569 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| |||||||||||||| || || | || | || || ||||| || || ||||| Sbjct 12846 TCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCCGTCCTCAAGCTGCTTACCAGCAAAA 12787 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | || ||||| | || | || || || || || || |||||| | Sbjct 12786 ATCAACCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATTTTAGCTTTGACATTT 12727 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || |||||| || | ||| ||||| || ||||| || ||||||||| Sbjct 12726 TCAATTGTATCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACA 12667 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 12666 AAAATCTGCAT 12656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324614517935544