Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4695 167 3e-36 seq1700 114 1e-20 >seq4695 Length=2473718 Score = 167 bits (184), Expect = 3e-36 Identities = 161/204 (79%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||||||| ||||| ||||| |||||||| |||||||| ||||| | ||||| |||| Sbjct 1457835 ACCAAATTCTCATTGACTATCCCATCACTTGCTGCAAAGAATGCAAGGACATGGGAAATA 1457894 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATATCTTTAGATAAATCTAC 19463 |||||||||||||||| | || | | || ||| | || || |||||||||||||| || Sbjct 1457895 AAATGTTTTTCATCTG-GTTTCAGCTTTTCCCACTGATCAAGGTCTTTAGATAAATCCAC 1457953 Query 19464 TTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATA 19523 ||||| ||||||| || ||||||||||||||||| ||||| | ||| || ||| | || Sbjct 1457954 CTCTTCTGCTGTCCAGAATGAAGCCTCTGCTTTTTTGTACATCTGCCAGATGTCATGGTA 1458013 Query 19524 TTGTATAGGAAATATAACAAATCT 19547 || || || || | |||||||| Sbjct 1458014 CTGAATGGGGAACAAGACAAATCT 1458037 Score = 125 bits (138), Expect = 8e-24 Identities = 167/225 (74%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 18766 TTTTTGA-ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCAT 18824 ||||| | |||| | || | ||| ||||| || || ||||||| ||| || | ||||| Sbjct 1456713 TTTTTCACATCCCAGCTCAACTAGAAGTCTGTCTGCAACAAATTCAATGTACTTCTTCAT 1456772 Query 18825 CATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTC 18884 || ||||||||||| || || || || ||||| || ||||||||||| ||||||||||| Sbjct 1456773 CAGCTCACAATTCATACCAATCAAGTTGACAGGCAGGGCATCTGTAAGGAATTCTTGTTC 1456832 Query 18885 TATATTTACTGCCTC-TGATATAATAGATACAACTCTATCTTCATTAGGAGG-GTATAGA 18942 || || || || | | || | ||| |||||| ||| |||| || ||| || Sbjct 1456833 AATGGCAACAGCATCTTTAATTATTTCATA-AACTCTGTCT---TTAGATGGTTTATTGA 1456888 Query 18943 --AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCT 18985 | |||||| ||||||| || |||||||||||||| ||||||| Sbjct 1456889 TTAAATGTTTGAACATCAGGCAAGCAAAATCACAATGAAGTCCCT 1456933 Score = 118 bits (130), Expect = 1e-21 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 18655 TTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCC 18714 ||||| || |||||||| |||||||| ||||| | || ||||||||||| ||||| ||| Sbjct 1456424 TTCATGACGCCCATTTTCTGATATTCCCCAACTTTCTTCTCAAAGAAATTCGTTTTCCCC 1456483 Query 18715 TCTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAT 18764 ||||| ||||| ||||||||||||||||||||||| | |||||| || Sbjct 1456484 TCTAAAGATATGTGTTCCATAAAATCAAATGGATTTTCTGAATTATAAAT 1456533 Score = 109 bits (120), Expect = 6e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||||| || ||||| |||||||| | || || |||| Sbjct 1457250 CCTCATCTCTGCTGATAAGCTCATTGCTGAAAGTTAAGCCAGGCATAATCCCCCTCTTTT 1457309 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| || || | ||| || |||||||| || || || ||||| || |||||||||| Sbjct 1457310 TCAACCAAAAAATTGCAGCGAAGGATCCAGAGAAAAAAATCCCTTCCACAGCTGCAAAAG 1457369 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | || | |||||| | || | ||| || | |||||| || | ||||| || | Sbjct 1457370 CTACAACTCTTTCACTGTATGGATGCTCAGCATCACCAATCCACTTAATGGCCCATTCTG 1457429 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 |||||||| | ||||| || | || || || | ||| || || Sbjct 1457430 CCTTCTTTCTCACACAAGGAAGGGTTTCAATTGCATTGAACAG 1457472 >seq1700 Length=809593 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 47310 AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTT 47369 |||||| | || |||||||||||||| || || |||||||| | | |||||||| ||| Sbjct 382815 AGATGATGGTTGACAATTTGAAATTCCCCTGAAAGTACTCTTCTAGTGTATATATTGCTT 382756 Query 47370 GTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATG 47429 || |||| ||| || |||||||| || || | ||||||||| || |||||||| ||||| Sbjct 382755 GTGTATGCTTCAATGGATTCATTGTTGCCGAGAATTTGAGCTGTGGATGCTGTTGGCATT 382696 Query 47430 GATGCAACTAATAAGCTATTTCTTACTCCATATTTT 47465 | ||| | | | || ||||| || ||| | ||| Sbjct 382695 GGTGCCATGAGGAGACTGTTTCTAACGCCAAACTTT 382660 Score = 105 bits (116), Expect = 8e-18 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 ||| | ||||||||| || || || | |||| | | || ||||||||||| ||||| Sbjct 377266 ATAGAGCTTCTCAAACTCTTCACCCCAAACATCTGCCAGTCCTGGACATTCATTGGGACA 377207 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 ||||| | ||| || ||| | | ||| | ||| || | ||| || ||||| || Sbjct 377206 CATCAGAGTCCAGTCTCCATTCTGCTCTACACGCCGCATGAAGAGATCAGGGATCCAGAG 377147 Query 48236 AGCTATAAATAA-ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294 ||| ||| | || ||| || | ||| | ||||| || || |||| | || | |||| Sbjct 377146 AGC-ATAGAAAAGATCTCTTGCTCTCTGCTCTTCTTTCCCTGTATTTTTCTTCAAATCAA 377088 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351 ||||||| | ||||| ||||||||||| |||| ||| ||||| | |||| |||| Sbjct 377087 GAAAGTCAAAGATATCCGCATGCCATGGCTCTAGATAGATTGCAAAGGCACCAGGTC 377031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562074911865720