Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq4695 105 8e-18 >seq4695 Length=2473718 Score = 105 bits (116), Expect = 8e-18 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | ||||| || ||||| || ||||| | || || ||||| Sbjct 1457252 TCATCTCTGCTGATAAGCTCATTGCTGAAAGTTAAGCCAGGCATAATCCCCCTCTTTTTC 1457311 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | |||||| ||||| || || |||||||| || ||||| ||||| || |||||||| ||| Sbjct 1457312 AACCAAAAAATTGCAGCGAAGGATCCAGAGAAAAAAATCCCTTCCACAGCTGCAAAAGCT 1457371 Query 37320 ACAAGACGTGTACCGAAAGT-TGAACTATAATCAGAAATCCAtttttttGTCCAATCTGC 37378 |||| | | || | | | || | | |||| |||||| || | | ||| ||||| Sbjct 1457372 ACAACTCTTTCACTGTATGGATGCTC-AGCATCACCAATCCACTTAATGGCCCATTCTGC 1457430 Query 37379 CTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGT 37425 ||| | | ||||| || ||||||||||| || || || |||| Sbjct 1457431 CTTCTTTCTCACACAAGGAAGGGTTTCAATTGCATTGAACAGGAAGT 1457477 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 37563 AAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAA 37622 || || ||||| |||||||||||||| ||||||||||| ||||| |||| |||||| Sbjct 1457838 AAATTCTCATTGACTATCCCATCACTTGCTGCAAAGAATGCAAGGACATGGGAAATAAAA 1457897 Query 37623 TGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCA 37682 ||| ||||||| | | |||| ||| | || || ||||| |||||||| || || Sbjct 1457898 TGTTTTTCATCTGGTTTCAGCTTTTCCCACTGATCAAGGTCTTTAGATAAATCCACCTCT 1457957 Query 37683 TCAACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGT 37742 || | ||||| || ||| ||| ||| |||||| ||| || |||| | || Sbjct 1457958 TCTGCTGTCCAGAATGAAGCCTCTGCTTTTTTGTACATCTGCCAGATGTCATGGTACTGA 1458017 Query 37743 ATTGGAAATATTACAAATCTATCAGATGATTCTTTAAG 37780 || || || | |||||||| ||| |||||| || Sbjct 1458018 ATGGGGAACAAGACAAATCTTCCAGGGTTTTCTTTCAG 1458055 Score = 95.1 bits (104), Expect = 1e-14 Identities = 89/111 (80%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 36870 TTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCC 36928 ||||| || |||||||| |||||||| |||||| |||| || || ||||| || || || Sbjct 1456424 TTCATGACGCCCATTTTCTGATATTCCCCAACTT-TCTTCTCAAAGAAATTCGTTTTCCC 1456482 Query 36929 TTCTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATAT 36979 |||| ||||| | ||||||||||||||||||||| || |||||| || Sbjct 1456483 CTCTAAAGATATGTGTTCCATAAAATCAAATGGATTTTCTGAATTATAAAT 1456533 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 37002 AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATT 37061 ||||| || || ||||||||||| ||||| || ||| || ||| | || |||||||| Sbjct 1456735 AGAAGTCTGTCTGCAACAAATTCAATGTACTTCTTCATCAGCTCACAATTCATACCAATC 1456794 Query 37062 AGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACT 37121 | || || || | |||||| ||| ||| || ||| || ||||||||||||| | Sbjct 1456795 AAGTTGACAGGCAGGGCATCTGTAAGGAATTCTTGTTCAATGGCAACAGCATCTTTAATT 1456854 Query 37122 ATATTAACAATAACT-TCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGC 37180 || || | || || |||| || ||| || |||||| ||| |||| | || || Sbjct 1456855 AT-TTCATAAACTCTGTCTTTAGATGGTTTATTGATTAAATGTTTGAACATCAGGCAAGC 1456913 Query 37181 AAAATCACAATG 37192 |||||||||||| Sbjct 1456914 AAAATCACAATG 1456925 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| | || || |||||||| |||||||||||||| ||| ||| | |||||| || || Sbjct 1457592 ATCTTTGATGTAGGTATCAATAAGTAAACTATACATCTCACTGTGCACATTTTCCATGGC 1457651 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTA 37547 || ||||||||||||||||| | ||| || | | ||||| || ||| Sbjct 1457652 AATTTGAAAACCATAAAAACAACGAGCCTCTGTCACCTGAACCTCTTTA 1457700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592281090700920