Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1115 156 3e-33 seq4782 118 8e-22 >seq1115 Length=79802 Score = 156 bits (172), Expect = 3e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 |||||| |||||||| || ||||||||||| || || ||||| || | | || | | Sbjct 1827 ACGTAATACTAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTACGACC 1768 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||| || || ||||| || | |||||| |||||||| || || |||||||| Sbjct 1767 ATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGGATACCTTCTTT 1708 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||| || ||| ||| |||| | |||||||| | ||| |||||||| |||| Sbjct 1707 GTCTTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGAT 1648 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || | ||||| ||||| |||||||| Sbjct 1647 TGTTTTACCAGTAAGTGTTTTCACAAAGATCTGCAT 1612 Score = 102 bits (112), Expect = 6e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 101344 ACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTAC 101403 |||||| |||||||| || || |||||||| |||||||| || ||| ||| |||| | Sbjct 1515 ACGCTGCTGATCGGGTGGGATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTTTCAAT 1456 Query 101404 AGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATAT 101463 |||||||| | || ||||||||||| | || ||||| || || || || ||||| || Sbjct 1455 GGTGTCAGATGGCTCAACTTCAAGAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGAT 1396 Query 101464 CTGCAT 101469 |||||| Sbjct 1395 CTGCAT 1390 >seq4782 Length=111569 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||| || || ||||| |||||||| || || || || | || ||| | | || || Sbjct 12864 ACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCCGTCCTCA 12805 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| ||||| ||||| | |||||| || || ||||| ||||||||||| || Sbjct 12804 AGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGG 12745 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| |||| | || ||| | || || ||||| || | || ||| Sbjct 12744 ATTTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAACCTCAAGGGTAATGGTCTTG 12685 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || ||||| ||||||||| Sbjct 12684 CCCGTCAGGGTCTTCACAAAAATCTGCATG 12655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396255106631811