Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1115 158 2e-33 seq4782 114 3e-20 seq4695 104 5e-17 >seq1115 Length=79802 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||||||||||||||| | ||||| ||||| ||| || || || || Sbjct 1838 CCACCACGAAGACGTAATACTAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAC 1779 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| || |||| || | |||||| ||||||||||| | | ||| ||||| ||||| Sbjct 1778 AGTGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGG 1719 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| ||||| || ||| ||| ||||| || | || || | ||| ||| Sbjct 1718 ATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCAACT 1659 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||||||||| | |||||| | ||| |||||||| Sbjct 1658 TCAAGGGTGATTGTTTTACCAGTAAGTGTTTTCACAAAGATCTGCAT 1612 >seq4782 Length=111569 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| || | | |||||| || | ||||| |||||| || ||||| || || Sbjct 12883 ACCACCTCTGAGTCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGA 12824 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || | || || | || ||||||||||| || || |||||||| ||||| || Sbjct 12823 GAGAGTGCGCCCGTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGG 12764 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||||||||| || |||||| ||| ||||| || | ||| | || || Sbjct 12763 AATACCTTCTTTATCCTGGATTTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAAC 12704 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| || || || | || || | ||| |||||||| Sbjct 12703 CTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAAATCTGCAT 12656 >seq4695 Length=2473718 Score = 104 bits (114), Expect = 5e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 50208 ACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATA 50267 || ||||||||| || || |||||| |||||| |||||||| | || | |||| Sbjct 1457835 ACCAAATTCTCATTGACTATCCCATCACTTGCTGCAAAGAATGCAAGGACATGGGAAATA 1457894 Query 50268 AAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACT 50327 ||||||||||||| ||| | |||||||| ||||| || || |||||||| || Sbjct 1457895 AAATGTTTTTCATCTGGTTTCAGCTTTTCCCACTGATCAAGGTCTTTAGATAAATCCACC 1457954 Query 50328 TCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATACATTTGATATATATCAAAATGT 50387 |||||| |||||| ||||| || | | |||||| ||||| || | || ||| | Sbjct 1457955 TCTTCTGCTGTCCAGAATGAAGCCTCTGCTTTTTTGTACATCTGCCAGATGTCATGGTAC 1458014 Query 50388 TCAATGGGAAATAGTACATATC 50409 | |||||| || | ||| ||| Sbjct 1458015 TGAATGGGGAACAAGACAAATC 1458036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984419164366050