Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1115 140 3e-28 seq4782 116 3e-21 >seq1115 Length=79802 Score = 140 bits (154), Expect = 3e-28 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || |||||||| || || || ||||| ||| | | Sbjct 1612 ATGCAGATCTTTGTGAAAACACTTACTGGTAAAACAATCACCCTTGAAGTTGAACCATCT 1671 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||| |||||||||||||| || || |||||||| Sbjct 1672 GACACCATTGAAAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCCGATCAG 1731 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| | |||||||| || ||||| || || ||| ||| | || ||||||| || | Sbjct 1732 CAGCGTCTTATCTTTGCTGGCAAACAACTTGAAGATGGTCG-TACAC-TGTCAGACTACA 1789 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||| || || ||||| || || || || || || || | || || ||| Sbjct 1790 ACATCCAGAAAGAATCTACTCTGCATTTAGTATTACGTCTTCGTGGTGGC 1839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||||||| |||| || | || || || |||||||| || ||||| | ||||| | Sbjct 1390 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACTATTACTCTTGAAGTTG-AGCCATC 1448 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || ||| ||||| |||||||||||||| || || |||||||| Sbjct 1449 TGACACCATTGAAAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCCGATCA 1508 Query 24823 ACAACGT 24829 || ||| Sbjct 1509 GCAGCGT 1515 >seq4782 Length=111569 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || ||||| || || || || ||| Sbjct 12656 ATGCAGATTTTTGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTTGAGCCCAGT 12715 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| || ||||| || |||||||| || ||||| || ||| Sbjct 12716 GATACAATTGAAAATGTCAAAGCTAAAATCCAGGATAAAGAAGGTATTCCTCCTGACCAA 12775 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| ||||| || || ||||| ||||| | | | | ||||| |||||| Sbjct 12776 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGACGGGCGCACTCTCTCAGACTATAAC 12835 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935 |||||||| || || || || ||||| || || || | | || || |||| Sbjct 12836 ATTCAAAAAGAGTCTACTCTCCACTTAGTACTGAGACTCAGAGGTGGTGGAA 12887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449870476798440