Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1115 150 1e-31 seq4782 114 1e-20 >seq1115 Length=79802 Score = 150 bits (166), Expect = 1e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| || || |||||||| || ||||| || || | | || ||| ||| || Sbjct 1820 ACTAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTACGACCATCTTCA 1761 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||||||||||||||| | || | | |||||||| || || ||||| ||||||||||| Sbjct 1760 AGTTGTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGGATACCTTCTTTGTCTTG- 1702 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | ||||||| |||| | |||||||| |||| |||||||| || || ||||| Sbjct 1701 AATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATTGTTTT 1642 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| | ||||| ||||| |||||||| Sbjct 1641 ACCAGTAAGTGTTTTCACAAAGATCTGCAT 1612 Score = 116 bits (128), Expect = 3e-21 Identities = 103/126 (82%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| || || ||||| ||||||||||| ||| || | ||||||| |||| | || Sbjct 1511 TGCTGATCGGGTGGGATACCTTCTTTGTCTTG-AATCTTAGCTTTGACATTTTCAATGGT 1453 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| | || ||||||||||| ||||| ||||| || ||||| |||||||| ||||| Sbjct 1452 GTCAGATGGCTCAACTTCAAGAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTG 1393 Query 29784 CATTTT 29789 ||| || Sbjct 1392 CATATT 1387 >seq4782 Length=111569 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| || || || || || || ||||||||||||||||| || | | ||||| || Sbjct 12868 CAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCCGTC 12809 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | ||||| || || || || || |||||||| ||||| || Sbjct 12808 CTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCTTTATC 12749 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | ||| ||||||| |||| | || ||| | || || ||||| || || || Sbjct 12748 CTGGATTTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAACCTCAAGGGTAATGGT 12689 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || | ||| || ||||| |||||||| Sbjct 12688 CTTGCCCGTCAGGGTCTTCACAAAAATCTGCAT 12656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385196556695043