Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4782 168 1e-36 seq1115 165 2e-35 seq4524 96.9 7e-15 >seq4782 Length=111569 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| | | ||| |||||||| |||||||| ||||| || || ||||| || || Sbjct 12883 ACCACCTCTGAGTCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGA 12824 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | ||||| || || || || |||||||| || | || ||||| || ||||| Sbjct 12823 GAGAGTGCGCCCGTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGG 12764 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||| || || || ||||| ||||||||||| |||||| | || || || Sbjct 12763 AATACCTTCTTTATCCTGGATTTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAAC 12704 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || | || || |||||||| |||| ||||| ||||| |||||||| || Sbjct 12703 CTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAAATCTGCATGAT 12653 >seq1115 Length=79802 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| |||||||||||||||||||| || || || || || || | | ||| ||||| Sbjct 1820 ACTAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTACGACCATCTTCA 1761 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 |||||||| ||||||||||| || | || ||||| || || || ||||| || |||||| Sbjct 1760 AGTTGTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGGATACCTTCTTTGTCTTGA 1701 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| ||||| ||||||||||| || ||| ||||| ||||| | || || || || Sbjct 1700 ATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATTGTTTTA 1641 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || ||||| |||||||| Sbjct 1640 CCAGTAAGTGTTTTCACAAAGATCTGCAT 1612 Score = 113 bits (124), Expect = 9e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || ||||| || || || ||||| || ||||||||||| ||||| ||||||||||| || Sbjct 1511 TGCTGATCGGGTGGGATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTTTCAATGGTG 1452 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| || || ||||| | ||| || |||||||| ||||| ||||| ||||| |||||| Sbjct 1451 TCAGATGGCTCAACTTCAAGAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGC 1392 Query 82809 AT 82810 || Sbjct 1391 AT 1390 >seq4524 Length=299079 Score = 96.9 bits (106), Expect = 7e-15 Identities = 127/175 (73%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 198350 ATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGC 198409 || ||| || || || | | |||||| |||||||| |||| | | ||||||||||| Sbjct 20759 ATTGCAGATCCAACTGGTCACAGAAGGGAAAATGCACGGTTTCCTGCGTATGTACTGGGC 20700 Query 198410 TAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCT 198469 ||| || || || |||||||| | | ||||| || || ||| | || || || || Sbjct 20699 TAAGAAAATTCTGGAATGGACCAAGTCGCCGGAGGATGCCTTGGCTGATGCCATTTACCT 20640 Query 198470 AAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTT-GTAT 198523 ||| |||||||| | |||| |||| ||||| || || |||||||||| |||| Sbjct 20639 GAACGATAAGTACAATTTAGATGGCAGAGATCCCAATGGCTACGTAGGTTAGTAT 20585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981766528294997