Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1115 136 3e-27 seq4782 87.8 1e-12 >seq1115 Length=79802 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | |||||| || ||||| ||||| ||||| || |||||||| || || Sbjct 1838 CCACCACGAAGACGTAATACTAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAC 1779 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || || | |||||| || ||||| || | |||||||||||| | || Sbjct 1778 AGTGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGG 1719 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| ||| || | || |||| || | |||||| || ||| || Sbjct 1718 ATACCTTCTTTGTCTTGAATCTT-AGCTTTGACATTTTCAATGGTGTCAGATGGTTCAAC 1660 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| |||||||| || | ||||| ||||||||||||||| Sbjct 1659 TTCAAGGGTGATTGTTTTACCAGTAAGTGTTTTCACAAAGATCTGCATA 1611 >seq4782 Length=111569 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||||||||| | | | || || || ||||| ||||||||| ||||| || || | Sbjct 12884 CACCACCTCTGAGTCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTG 12825 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||| ||||| |||| || | || || || ||||||||||| | ||| || || | | Sbjct 12824 AGAGAGTGCGCCCGTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAG 12765 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||| || ||||| | || |||| || | || || || | || Sbjct 12764 GAATACCTTCTTTATCCTGGATTTT-AGCTTTGACATTTTCAATTGTATCACTGGGCTCA 12706 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || || || || || | || || ||||| |||||||| Sbjct 12705 ACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAAATCTGCAT 12656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328684678676160