Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1115 100 3e-16 seq4782 87.8 2e-12 >seq1115 Length=79802 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || ||||| | | || ||||| || ||||||||||| || ||||| | Sbjct 1826 CGTAATACTAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTACGACCA 1767 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || ||||| || | | |||| |||||||| ||||| || || || |||||||| Sbjct 1766 TCTTCAAGTTGTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGGATACCTTCTTTG 1707 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||| | | ||| | || || | || || ||||| | || | Sbjct 1706 TCTTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATT 1647 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| || ||||| | || |||||||| Sbjct 1646 GTTTTACCAGTAAGTGTTTTCACAAAGATCTGCAT 1612 >seq4782 Length=111569 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||||||||| ||||| | || ||| || || ||||| ||||| | | Sbjct 12849 GACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCCGTCCTCAAGCTGCTTACCAGCA 12790 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | | |||||| || ||||| || ||||||||||| ||||| ||| | Sbjct 12789 AAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATTTTAGCTTTGACA 12730 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||||| || || | || | || || || ||||| || || Sbjct 12729 TTTTCAATTGTATCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTC 12670 Query 132110 ATGAAAATCTGCATGA 132125 | ||||||||||||| Sbjct 12669 ACAAAAATCTGCATGA 12654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476582466302280