Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1115 98.7 9e-16 >seq1115 Length=79802 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||| | || || ||| | ||||| | ||||| ||| ||| | Sbjct 1612 ATGCAGATCTTTGTGAAAACACTTACTGGTAAAACAATCACCCTTGAAGTTGAA-CCATC 1670 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| || ||| || ||||| ||||| || |||||||| Sbjct 1671 TGACACCATTGAAAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCCGATCA 1730 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 ||| | || || | | ||||||||||| ||||||| | | | ||||| || ||| Sbjct 1731 GCAGCGTCTTATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACACTGTCA--GACTAC 1788 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 || || || |||||||| || | |||||||| ||| Sbjct 1789 AACATCCAGAAAGAATCTACTCTGCATTTAGTATTA 1824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445067566371360