Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1115 116 4e-21 seq4782 104 2e-17 >seq1115 Length=79802 Score = 116 bits (128), Expect = 4e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG--TCGTCGAGCT 134568 || || || ||||| || || ||||||||||| || |||| || || || || | Sbjct 1814 TGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTG--ACAGTGTACGACCATCTTCAAGTT 1757 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 ||||||| ||||| || | ||||||||||||||| || || |||||||| |||||||| | Sbjct 1756 GTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTGGGATACCTTCTTTGTCTTGAATCT 1697 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | |||||| || | ||||| || | ||| || || || || || |||||||| | Sbjct 1696 TAGCTTTGACATTTTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATTGTTTTACCAG 1637 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | | ||||| || || || ||||| Sbjct 1636 TAAGTGTTTTCACAAAGATCTGCAT 1612 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 134588 ACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAA 134647 ||||||||||||||| || || |||||||| |||||||| || |||||| || | Sbjct 1515 ACGCTGCTGATCGGGTGGGATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTTTCAAT 1456 Query 134648 TGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAAT 134707 ||||| || | || || || |||||||| || || || || || || ||||| || || Sbjct 1455 GGTGTCAGATGGCTCAACTTCAAGAGTAATAGTCTTGCCCGTCAAGGTCTTAACAAAGAT 1396 Query 134708 TTGCATTTTG 134717 ||||| ||| Sbjct 1395 CTGCATATTG 1386 >seq4782 Length=111569 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||||| || || | ||| || || || || ||||||||||| ||||| Sbjct 12882 CCACCTCTGAGTCTCAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAG 12823 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| || || ||||||||||| | ||| || || || || Sbjct 12822 AGAGTGCGCCCGTCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGA 12763 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| || || ||||| |||||| || | ||| || | || || Sbjct 12762 ATACCTTCTTTATCCTGGATTTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAACC 12703 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| || || || | || || || ||||| ||||| Sbjct 12702 TCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAAATCTGCAT 12656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505367930793960