Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4695 152 7e-32 seq1700 141 1e-28 >seq4695 Length=2473718 Score = 152 bits (168), Expect = 7e-32 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||||||| ||||| ||||| |||||||| || ||||| ||||| | ||||| ||||| Sbjct 1457836 CCAAATTCTCATTGACTATCCCATCACTTGCTGCAAAGAATGCAAGGACATGGGAAATAA 1457895 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 ||| ||||||||| ||| ||| || | ||| | || | ||||| |||| ||| || | Sbjct 1457896 AATGTTTTTCATCTGGTTTCAGCTTTTCCCACTGATCAAGGTCTTTAGATAAATCCACCT 1457955 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 |||| |||||||| || || |||||||| ||||||||||| | ||| || ||| | || | Sbjct 1457956 CTTCTGCTGTCCAGAATGAAGCCTCTGCTTTTTTGTACATCTGCCAGATGTCATGGTACT 1458015 Query 40179 GTATTGGAAAAATAACAAATCT 40200 | || || || | |||||||| Sbjct 1458016 GAATGGGGAACAAGACAAATCT 1458037 >seq1700 Length=809593 Score = 141 bits (156), Expect = 1e-28 Identities = 169/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || || || || ||||||||||| ||| ||| ||||||||||| |||||||||| | | Sbjct 377256 TCAAACTCTTCACCCCAAACATCTGCCAGTCCTGGACATTCATTGGGACACATCAGAGTC 377197 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AA 69635 || | ||| | || || || ||| || ||||| || ||||| ||||| ||| || Sbjct 377196 CAGTCTCCATTCTGCTCTACACGCCGCATGAAGAGATCAGGGATCCAGAGAGC-ATAGAA 377138 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 |||||||| | ||| | ||||| || ||||||||||| || | ||| ||||| || | Sbjct 377137 AAGATCTCTTGCTCTCTGCTCTTCTTTCCCTGTATTTTTCTTCAAATCAAGAAAGTCAAA 377078 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTC 69742 ||||| | ||||||||| |||||||| || || | | | || |||| Sbjct 377077 GATATCCGCATGCCATGGCTCTAGATAGATTGCAAAGGCACCAGGTC 377031 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTA 68757 || ||||| | || || |||||||||||||| || | ||||| | |||||| ||||| Sbjct 382818 AGTAGATGATGGTTGACAATTTGAAATTCCCCTGAAAGTACTCTTCTAGTGTATATATTG 382759 Query 68758 CTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGC 68817 || || |||| ||| | |||||||| || || ||||||||||| || ||||| |||||| Sbjct 382758 CTTGTGTATGCTTCAATGGATTCATTGTTGCCGAGAATTTGAGCTGTGGATGCTGTTGGC 382699 Query 68818 ATAGGTGCCACCAATAAACTATTTCTAA 68845 || ||||||| | | ||| ||||||| Sbjct 382698 ATTGGTGCCATGAGGAGACTGTTTCTAA 382671 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 68910 CCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGG 68969 ||| | ||| | ||| |||||||| ||| || | || | || || ||||||| Sbjct 380621 CCACATATCATGTTGAAGAATTCCTTTAGACACAGGACAGCCTTCGTAAGTCTCATAAGT 380562 Query 68970 TCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAA 69029 || | || ||| || | |||||| || || || | |||| | | || || || || || Sbjct 380561 CCCATACTTTTCTGCCAATTCACAGCTGGCATCAAGTGCAGCAAAGTACATGGTCTCAAA 380502 Query 69030 AATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAA 69089 ||||| ||||| | | || ||||| | || ||||||||||| | | |||||| Sbjct 380501 AATCTCTTTATTCAACTGTTTGGCTTCAGGGCTGTCGAATGGATACCTCATCAAAATAAA 380442 Query 69090 TGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATG 69131 |||||||||||| |||||||| |||| || ||||| | ||| Sbjct 380441 TGCATCTGCCAAACCCTGAACTCCAAGCCCAATAGGGCGATG 380400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686867387985720