Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4695 172 4e-38 >seq4695 Length=2473718 Score = 172 bits (190), Expect = 4e-38 Identities = 175/226 (77%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 ||||| | |||||| || || |||||| |||| || ||||| || |||||||| ||| Sbjct 1458058 TTGCTGAAAGAAAACCCTGGAAGATTTGTCTTGTTCCCCATTCAGTACCATGACATCTGG 1457999 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 || ||||||||||||||| |||| ||||| |||||||||||||| || ||||| ||||| Sbjct 1457998 CAGATGTACAAAAAAGCAGAGGCTTCATTCTGGACAGCAGAAGAGGTGGATTTATCTAAA 1457939 Query 43796 GACTTAGCACATTGG--ATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTT 43853 ||| | | || ||| | || | |||||| | |||||||||||||| || || Sbjct 1457938 GACCTTGATCAGTGGGAAAAGC--TGAAACCAGATGAAAAACATTTTATTTCCCATGTCC 1457881 Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGT 43899 | || || ||||| || || || |||||||||||||| |||||||| Sbjct 1457880 TTGCATTCTTTGCAGCAAGTGATGGGATAGTCAATGAGAATTTGGT 1457835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 |||| ||||| | |||| || || ||||||||||| |||||||||||||| |||||| Sbjct 1457698 AAGAGGTTCAGGTGACAGAGGCTCGTTGTTTTTATGGTTTTCAAATTGCCATGGAAAATG 1457639 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 | || || ||||| ||| | || || ||||| |||||||||||| Sbjct 1457638 TGCACAGTGAGATGTATAGTTTACTTATTGATACCTACATCAAAGAT 1457592 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||| | || || || || || ||||| || || ||||| | Sbjct 1456520 AAAATCCATTTGATTTTATGGAACACATATCTTTAGAGGGGAAAACGAATTTCTTTGAGA 1456461 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAGTGAC 44599 | ||||| ||||||||| ||||||||||||| ||||||| || Sbjct 1456460 AGAAAGTTGGGGAATATCAGAAAATGGGCGTCATG--AACAAGTCAC 1456416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397432637412115