Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1115 113 4e-20 seq1700 107 2e-18 seq4782 100 2e-16 >seq1115 Length=79802 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | || ||||| ||||| | ||||| ||||| || || |||||||| Sbjct 1840 TGCCACCACGAAGACGTAATACTAAATGCAGAGTAGATTCTTTCTGGATGTTGTAGTCTG 1781 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | ||||| || ||||| || || | || |||||||| ||||| || | Sbjct 1780 ACAGTGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGCTGCTGATCGGGTG 1721 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| ||||| || ||||| ||| | |||| | ||||| | | ||||| Sbjct 1720 GGATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCAA 1661 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| || || || | ||| || || || |||||||||||||| |||||| Sbjct 1660 CTTCAAGGGTGATTGTTTTACCAGTAAGTGTTTTCACAAAGATCTGCATA 1611 >seq1700 Length=809593 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 |||||||| |||||||||| || | ||| | || ||||| || || ||| ||| || Sbjct 377223 GGACATTCATTGGGACACATCAGAGTCCAGTCTCCATTCTGCTCTACACGCCGCATGAAG 377164 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | ||| || | ||| | || || || |||||||| ||| | | ||||||| | || || Sbjct 377163 AGATCAGGGATCCAGAGAGCATAGAAAAGATCTCTTGCTCTCTGCTCTTCTTTCCCTGTA 377104 Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 |||| ||||||| | |||||| || || ||||||||||| || || | ||| | ||| Sbjct 377103 TTTTTCTTCAAATCAAGAAAGTCAAAGATATCCGCATGCCATGGCTCTAGATAGATTGC 377045 >seq4782 Length=111569 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 || ||| || || | ||||| ||||||||||| || ||||| | ||||| |||| Sbjct 12868 CAGTACTAAGTGGAGAGTAGACTCTTTTTGAATGTTATAGTCTGAGAGAGTGCGCCCGTC 12809 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 || ||||| ||||| || |||| | | |||||| || || || | ||| |||||||| Sbjct 12808 CTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGAGGAATACCTTCTTTATC 12749 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||| || ||| | |||| | || || ||| ||||| || || || || | Sbjct 12748 CTGGATTTTAGCTTTGACATTTTCAATTGTATCACTGGGCTCAACCTCAAGGGTAATGGT 12689 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||||||||| || |||||||| || ||||| Sbjct 12688 CTTGCCCGTCAGGGTCTTCACAAAAATCTGCAT 12656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424909422223176